Aliases for LOC100287840 Gene

Aliases for LOC100287840 Gene

  • Tetraspanin 12 Pseudogene 3
  • Tetraspanin 12 (TSPAN12) Pseudogene 5
  • AL592436.2 5

External Ids for LOC100287840 Gene

Previous GeneCards Identifiers for LOC100287840 Gene

  • GC00U925100
  • GC01M116119

Summaries for LOC100287840 Gene

GeneCards Summary for LOC100287840 Gene

LOC100287840 (Tetraspanin 12 Pseudogene) is a Pseudogene.

Additional gene information for LOC100287840 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287840 Gene

Genomics for LOC100287840 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100287840 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J115594 Enhancer 0.8 Ensembl ENCODE 0.4 -17.5 -17515 2.6 DEK CTCF REST TRIM22 SMC3 RAD21 RFX5 MAX ZNF143 GLIS1 piR-54207 VANGL1 ENSG00000207502 CASQ2 NGF-AS1 NGF lnc-CASQ2-1 LOC100287840
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100287840 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100287840 Gene

Latest Assembly
chr1:115,577,226-115,577,786
(GRCh38/hg38)
Size:
561 bases
Orientation:
Minus strand

Previous Assembly
chr1:116,119,847-116,120,406
(GRCh37/hg19 by Entrez Gene)
Size:
560 bases
Orientation:
Minus strand

chr1:116,119,850-116,120,407
(GRCh37/hg19 by Ensembl)
Size:
558 bases
Orientation:
Minus strand

Genomic View for LOC100287840 Gene

Genes around LOC100287840 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100287840 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287840 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100287840 Gene

Proteins for LOC100287840 Gene

Post-translational modifications for LOC100287840 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100287840 Gene

Domains & Families for LOC100287840 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287840 Gene

Function for LOC100287840 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287840 Gene

Localization for LOC100287840 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287840 Gene

Pathways & Interactions for LOC100287840 Gene

PathCards logo

SuperPathways for LOC100287840 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100287840 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100287840 Gene

Drugs & Compounds for LOC100287840 Gene

No Compound Related Data Available

Transcripts for LOC100287840 Gene

mRNA/cDNA for LOC100287840 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287840 Gene

No ASD Table

Relevant External Links for LOC100287840 Gene

GeneLoc Exon Structure for
LOC100287840

Expression for LOC100287840 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100287840 Gene

genes like me logo Genes that share expression patterns with LOC100287840: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287840 Gene

Orthologs for LOC100287840 Gene

Evolution for LOC100287840 Gene

ENSEMBL:
Gene Tree for LOC100287840 (if available)
TreeFam:
Gene Tree for LOC100287840 (if available)

No data available for Orthologs for LOC100287840 Gene

Paralogs for LOC100287840 Gene

No data available for Paralogs for LOC100287840 Gene

Variants for LOC100287840 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100287840 Gene

Disorders for LOC100287840 Gene

No disorders were found for LOC100287840 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287840 Gene

Publications for LOC100287840 Gene

No publications were found for LOC100287840 Gene.

No data available for Mastermind for LOC100287840 Gene

Products for LOC100287840 Gene

Sources for LOC100287840 Gene