Aliases for LOC100287808 Gene

Subcategory (RNA class) for LOC100287808 Gene

lncRNA

Aliases for LOC100287808 Gene

  • Uncharacterized LOC100287808 3

External Ids for LOC100287808 Gene

Previous GeneCards Identifiers for LOC100287808 Gene

  • GC00U928194
  • GC17P036904
  • GC17P032701
  • GC17U901627

Summaries for LOC100287808 Gene

GeneCards Summary for LOC100287808 Gene

LOC100287808 (Uncharacterized LOC100287808) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100287808 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287808 Gene

Genomics for LOC100287808 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100287808 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J038745 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.8 794 8.7 ZNF221 CEBPG SP1 HNRNPL CREB1 GATAD2A TEAD4 PRDM10 ZNF629 TFE3 PCGF2 PSMB3 ENSG00000277182 LOC100287808 piR-33470-011 MED1 CDK12 LOC105371762 SNORA21 RPL23
GH17J038740 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 -6.5 -6479 3.6 PRDM10 RFX1 FOXA1 ZIC2 ZSCAN4 RBFOX2 PKNOX1 POLR2A ZNF341 SCRT2 C17orf98 PCGF2 MLLT6 FBXO47 PIP4K2B SOCS7 PSMB3 CISD3 hsa-miR-5095-223 LOC100287808
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100287808 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100287808 gene promoter:
  • ARP-1
  • GATA-3
  • HOXA9
  • HOXA9B
  • LCR-F1
  • Meis-1
  • Meis-1b
  • p300
  • Pax-5
  • YY1

Genomic Locations for LOC100287808 Gene

Genomic Locations for LOC100287808 Gene
chr17:38,749,034-38,751,752
(GRCh38/hg38)
Size:
2,719 bases
Orientation:
Plus strand

Genomic View for LOC100287808 Gene

Genes around LOC100287808 on UCSC Golden Path with GeneCards custom track
LOC100287808 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100287808 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287808 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100287808 Gene

Proteins for LOC100287808 Gene

Post-translational modifications for LOC100287808 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100287808 Gene

Domains & Families for LOC100287808 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287808 Gene

Function for LOC100287808 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287808 Gene

Localization for LOC100287808 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287808 Gene

Pathways & Interactions for LOC100287808 Gene

PathCards logo

SuperPathways for LOC100287808 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100287808 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100287808 Gene

Drugs & Compounds for LOC100287808 Gene

No Compound Related Data Available

Transcripts for LOC100287808 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100287808 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC4454_9606 lncRNA 2719 1

RefSeq: NR_149004,

LOC100287808 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100287808 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287808 Gene

No ASD Table

Relevant External Links for LOC100287808 Gene

GeneLoc Exon Structure for
LOC100287808

Expression for LOC100287808 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100287808

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287808 Gene

Orthologs for LOC100287808 Gene

No data available for Orthologs and Evolution for LOC100287808 Gene

Paralogs for LOC100287808 Gene

No data available for Paralogs for LOC100287808 Gene

Variants for LOC100287808 Gene

Additional dbSNP identifiers (rs#s) for LOC100287808 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100287808 Gene

Disorders for LOC100287808 Gene

No disorders were found for LOC100287808 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287808 Gene

Publications for LOC100287808 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

No data available for Mastermind for LOC100287808 Gene

Products for LOC100287808 Gene

Sources for LOC100287808 Gene