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Aliases for LOC100287792 Gene

Subcategory (RNA class) for LOC100287792 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100287792 Gene

  • Uncharacterized LOC100287792 3
  • Novel Transcript 5
  • AL162293.1 5

External Ids for LOC100287792 Gene

Previous GeneCards Identifiers for LOC100287792 Gene

  • GC00U925658
  • GC20P036306

Summaries for LOC100287792 Gene

GeneCards Summary for LOC100287792 Gene

LOC100287792 (Uncharacterized LOC100287792) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100287792 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100287792 Gene

Genomics for LOC100287792 Gene

GeneHancer (GH) Regulatory Elements for LOC100287792 Gene

Promoters and enhancers for LOC100287792 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J037676 Enhancer 0.7 Ensembl 600.7 +1.0 991 2.2 SP1 SP5 PRDM1 PKNOX1 RXRA RCOR2 FOXA2 MAFK JUND YY1 LOC100287792 VSTM2L TTI1 RPRD1B CTNNBL1 LOC105372609
GH20J037679 Enhancer 0.5 Ensembl 0.7 +3.3 3290 1.6 ZNF384 SP7 ZNF629 ZNF24 ZBTB17 FOSL1 ZBTB6 VSTM2L LOC100287792 LOC105372609
GH20J037651 Enhancer 1 Ensembl ENCODE 0.3 -25.1 -25109 2.8 CTCF MAFK SP5 RAD21 RXRA REST RXRB IRF2 ZNF316 EZH2 VSTM2L CTNNBL1 LINC00489 LOC100287792
GH20J037626 Enhancer 1 Ensembl 0.3 -46.7 -46709 8.4 ZNF652 ELF3 CBFA2T2 ZNF148 CEBPG RERE NFIB AHR BACH1 TFE3 CTNNBL1 VSTM2L SAMHD1 LINC00489 LOC100287792
GH20J037639 Enhancer 0.8 Ensembl 0.3 -33.3 -33309 7.6 ZSCAN21 IKZF1 ATF7 ZNF692 ZNF239 FOXK2 HES1 YBX1 RUNX3 ZNF580 CTNNBL1 SNHG17 VSTM2L SNORA71A SNORA71C RALGAPB RPN2 RPS3P2 RBL1 TTI1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100287792 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100287792 gene promoter:
  • CUTL1
  • GR
  • GR-alpha
  • GR-beta
  • Meis-1b
  • Pbx1a
  • POU2F1
  • POU2F1a
  • Sp1
  • STAT5A

Genomic Locations for LOC100287792 Gene

Genomic Locations for LOC100287792 Gene
chr20:37,676,910-37,683,234
(GRCh38/hg38)
Size:
6,325 bases
Orientation:
Plus strand
chr20:36,305,312-36,311,636
(GRCh37/hg19)
Size:
6,325 bases
Orientation:
Plus strand

Genomic View for LOC100287792 Gene

Genes around LOC100287792 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100287792 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287792 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100287792 Gene

Proteins for LOC100287792 Gene

Post-translational modifications for LOC100287792 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100287792 Gene

Domains & Families for LOC100287792 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100287792 Gene

Function for LOC100287792 Gene

Phenotypes From GWAS Catalog for LOC100287792 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287792 Gene

Localization for LOC100287792 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287792 Gene

Pathways & Interactions for LOC100287792 Gene

PathCards logo

SuperPathways for LOC100287792 Gene

No Data Available

Interacting Proteins for LOC100287792 Gene

Gene Ontology (GO) - Biological Process for LOC100287792 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100287792 Gene

Drugs & Compounds for LOC100287792 Gene

No Compound Related Data Available

Transcripts for LOC100287792 Gene

mRNA/cDNA for LOC100287792 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LOC100287792 Gene

Uncharacterized LOC100287792:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287792 Gene

No ASD Table

Relevant External Links for LOC100287792 Gene

GeneLoc Exon Structure for
LOC100287792

Expression for LOC100287792 Gene

SOURCE GeneReport for Unigene cluster for LOC100287792 Gene:

Hs.517026
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287792 Gene

Orthologs for LOC100287792 Gene

Evolution for LOC100287792 Gene

ENSEMBL:
Gene Tree for LOC100287792 (if available)
TreeFam:
Gene Tree for LOC100287792 (if available)

No data available for Orthologs for LOC100287792 Gene

Paralogs for LOC100287792 Gene

No data available for Paralogs for LOC100287792 Gene

Variants for LOC100287792 Gene

Sequence variations from dbSNP and Humsavar for LOC100287792 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000041499 -- 37,680,030(+) G/A intron_variant
rs1000471046 -- 37,681,440(+) G/A intron_variant
rs1000579154 -- 37,675,342(+) C/T upstream_transcript_variant
rs1001207205 -- 37,679,701(+) C/T intron_variant
rs1001486048 -- 37,679,789(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100287792 Gene

Variant ID Type Subtype PubMed ID
esv2758793 CNV loss 17122850
nsv179940 CNV deletion 16902084
nsv9806 CNV gain 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100287792 Gene

Disorders for LOC100287792 Gene

No disorders were found for LOC100287792 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287792 Gene

Publications for LOC100287792 Gene

No publications were found for LOC100287792 Gene.

No data available for External Links for LOC100287792 Gene

Products for LOC100287792 Gene

Sources for LOC100287792 Gene

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