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Aliases for LOC100287792 Gene
Subcategory (RNA class) for LOC100287792 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LOC100287792 Gene
External Ids for LOC100287792 Gene
- Entrez Gene: 100287792
Previous GeneCards Identifiers for LOC100287792 Gene
- GC00U925658
- GC20P036306
Summaries for LOC100287792 Gene
GeneCards Summary for LOC100287792 Gene
LOC100287792 (Uncharacterized LOC100287792) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC100287792 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287792 Gene
Genomics for LOC100287792 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC100287792 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH20J037679 | Enhancer | 0.5 | Ensembl | 0.7 | +3.3 | 3291 | 1.6 | ZNF629 ZNF24 ZBTB17 FOSL1 ATF3 ZNF384 ZBTB6 SP7 | VSTM2L ENSG00000204117 LOC100287792 CTNNBL1 LOC105372609 BLCAP | |
| GH20J037681 | Enhancer | 0.4 | Ensembl | 0.7 | +4.8 | 4791 | 0.2 | REST RCOR1 MIER2 | ENSG00000204117 LOC100287792 LOC105372609 CTNNBL1 BLCAP | |
| GH20J037686 | Enhancer | 0.5 | Ensembl | 0.4 | +10.7 | 10659 | 1.3 | ZIC2 OSR2 CREB1 ZSCAN16 FOS JUND EZH2 SP7 | VSTM2L LOC105372609 lnc-BLCAP-3 CTNNBL1 LOC100287792 BLCAP | |
| GH20J037688 | Enhancer | 0.5 | Ensembl | 0.4 | +11.6 | 11591 | 0.2 | ZIC2 ZNF24 OSR2 ZSCAN16 SP7 | LOC105372609 lnc-BLCAP-3 CTNNBL1 LOC100287792 BLCAP |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100287792 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the LOC100287792 gene promoter:
-
- CUTL1
- GR
- GR-alpha
- GR-beta
- Meis-1b
- Pbx1a
- POU2F1
- POU2F1a
- Sp1
- STAT5A
Genomic Locations for LOC100287792 Gene
Genomic Locations for LOC100287792 Gene
- chr20:37,676,910-37,683,760
- (GRCh38/hg38)
- Size:
- 6,851 bases
- Orientation:
- Plus strand
Genomic View for LOC100287792 Gene
Genes around LOC100287792 on UCSC Golden Path with GeneCards custom track
LOC100287792 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 20q11.23 by Entrez Gene
LOC100287792 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100287792 Gene
Proteins for LOC100287792 Gene
Post-translational modifications for LOC100287792 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100287792
- Origene Custom Protein Services for LOC100287792
No data available for DME Specific Peptides for LOC100287792 Gene
Domains & Families for LOC100287792 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287792 Gene
Function for LOC100287792 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287792 Gene
Localization for LOC100287792 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287792 Gene
Transcripts for LOC100287792 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100287792 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00004EF392_9606 | lncRNA | 2112 | 3 |
RefSeq: NR_040021, LNCipedia: lnc-CTNNBL1-1:1, NONCODE: NONHSAT079631.2, |
| URS00008B31AB_9606 | lncRNA | 703 | 3 |
LncBook: HSALNT0266873, LNCipedia: lnc-CTNNBL1-1:2, NONCODE: NONHSAT079632.2, |
| URS00008B61C0_9606 | lncRNA | 546 | 3 |
LncBook: HSALNT0266874, LNCipedia: lnc-CTNNBL1-1:3, NONCODE: NONHSAT079633.2, |
LOC100287792 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC100287792 Gene
- 1 REFSEQ mRNAs :
- 1 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC100287792 Gene
- GeneLoc Exon Structure for
- LOC100287792
Expression for LOC100287792 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100287792
SOURCE GeneReport for Unigene cluster for LOC100287792 Gene:
Hs.517026
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287792 Gene
Orthologs for LOC100287792 Gene
No data available for Orthologs and Evolution for LOC100287792 Gene
Paralogs for LOC100287792 Gene
No data available for Paralogs for LOC100287792 Gene
Variants for LOC100287792 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100287792 Gene
Disorders for LOC100287792 Gene
No disorders were found for LOC100287792 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287792 Gene
Publications for LOC100287792 Gene
No publications were found for LOC100287792 Gene.
No data available for Mastermind for LOC100287792 Gene
Products for LOC100287792 Gene
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- Lentiviral ORF Clones
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- VectorBuilder Stable cell line generation for LOC100287792
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Sources for LOC100287792 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB