Aliases for LOC100287792 Gene

Subcategory (RNA class) for LOC100287792 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100287792 Gene

  • Uncharacterized LOC100287792 3
  • NONHSAG031735.2 91
  • Lnc-CTNNBL1-1 165
  • HSALNG0129921 164
  • HSALNG0129920 164

External Ids for LOC100287792 Gene

Previous GeneCards Identifiers for LOC100287792 Gene

  • GC00U925658
  • GC20P036306

Summaries for LOC100287792 Gene

GeneCards Summary for LOC100287792 Gene

LOC100287792 (Uncharacterized LOC100287792) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100287792 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287792 Gene

Genomics for LOC100287792 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100287792 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J037679 Enhancer 0.5 Ensembl 0.7 +3.3 3291 1.6 ZNF629 ZNF24 ZBTB17 FOSL1 ATF3 ZNF384 ZBTB6 SP7 VSTM2L ENSG00000204117 LOC100287792 CTNNBL1 LOC105372609 BLCAP
GH20J037681 Enhancer 0.4 Ensembl 0.7 +4.8 4791 0.2 REST RCOR1 MIER2 ENSG00000204117 LOC100287792 LOC105372609 CTNNBL1 BLCAP
GH20J037686 Enhancer 0.5 Ensembl 0.4 +10.7 10659 1.3 ZIC2 OSR2 CREB1 ZSCAN16 FOS JUND EZH2 SP7 VSTM2L LOC105372609 lnc-BLCAP-3 CTNNBL1 LOC100287792 BLCAP
GH20J037688 Enhancer 0.5 Ensembl 0.4 +11.6 11591 0.2 ZIC2 ZNF24 OSR2 ZSCAN16 SP7 LOC105372609 lnc-BLCAP-3 CTNNBL1 LOC100287792 BLCAP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100287792 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100287792 gene promoter:
  • CUTL1
  • GR
  • GR-alpha
  • GR-beta
  • Meis-1b
  • Pbx1a
  • POU2F1
  • POU2F1a
  • Sp1
  • STAT5A

Genomic Locations for LOC100287792 Gene

Genomic Locations for LOC100287792 Gene
chr20:37,676,910-37,683,760
(GRCh38/hg38)
Size:
6,851 bases
Orientation:
Plus strand

Genomic View for LOC100287792 Gene

Genes around LOC100287792 on UCSC Golden Path with GeneCards custom track
LOC100287792 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100287792 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287792 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100287792 Gene

Proteins for LOC100287792 Gene

Post-translational modifications for LOC100287792 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100287792 Gene

Domains & Families for LOC100287792 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287792 Gene

Function for LOC100287792 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287792 Gene

Localization for LOC100287792 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287792 Gene

Pathways & Interactions for LOC100287792 Gene

PathCards logo

SuperPathways for LOC100287792 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100287792 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100287792 Gene

Drugs & Compounds for LOC100287792 Gene

No Compound Related Data Available

Transcripts for LOC100287792 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100287792 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004EF392_9606 lncRNA 2112 3

RefSeq: NR_040021,

LNCipedia: lnc-CTNNBL1-1:1,

NONCODE: NONHSAT079631.2,

URS00008B31AB_9606 lncRNA 703 3

LncBook: HSALNT0266873,

LNCipedia: lnc-CTNNBL1-1:2,

NONCODE: NONHSAT079632.2,

URS00008B61C0_9606 lncRNA 546 3

LncBook: HSALNT0266874,

LNCipedia: lnc-CTNNBL1-1:3,

NONCODE: NONHSAT079633.2,

LOC100287792 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100287792 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287792 Gene

No ASD Table

Relevant External Links for LOC100287792 Gene

GeneLoc Exon Structure for
LOC100287792

Expression for LOC100287792 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100287792 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100287792

SOURCE GeneReport for Unigene cluster for LOC100287792 Gene:

Hs.517026
genes like me logo Genes that share expression patterns with LOC100287792: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287792 Gene

Orthologs for LOC100287792 Gene

No data available for Orthologs and Evolution for LOC100287792 Gene

Paralogs for LOC100287792 Gene

No data available for Paralogs for LOC100287792 Gene

Variants for LOC100287792 Gene

Additional dbSNP identifiers (rs#s) for LOC100287792 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100287792 Gene

Variant ID Type Subtype PubMed ID
esv2758793 CNV loss 17122850
nsv179940 CNV deletion 16902084
nsv9806 CNV gain 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100287792 Gene

Disorders for LOC100287792 Gene

No disorders were found for LOC100287792 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287792 Gene

Publications for LOC100287792 Gene

No publications were found for LOC100287792 Gene.

No data available for Mastermind for LOC100287792 Gene

Products for LOC100287792 Gene

Sources for LOC100287792 Gene