Aliases for LOC100287653 Gene

Aliases for LOC100287653 Gene

  • PDGFA Associated Protein 1 Pseudogene 3
  • PDGFA Associated Protein 1 (PDAP1) Pseudogene 5
  • AC084880.1 5

External Ids for LOC100287653 Gene

Previous GeneCards Identifiers for LOC100287653 Gene

  • GC00U926093
  • GC12P119636

Summaries for LOC100287653 Gene

GeneCards Summary for LOC100287653 Gene

LOC100287653 (PDGFA Associated Protein 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100287653 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287653 Gene

Genomics for LOC100287653 Gene

GeneHancer (GH) Regulatory Elements for LOC100287653 Gene

Promoters and enhancers for LOC100287653 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J119195 Enhancer 0.2 FANTOM5 750.6 +0.5 538 0.4 LOC100287653 TMEM233 HSPB8 LOC105370026
GH12J119196 Enhancer 0.2 dbSUPER 755.5 +1.9 1878 1 LOC100287653 LOC105370026 HSPB8
GH12J119174 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 7.1 -15.1 -15097 10.1 POLR2A MNT SP1 ZNF280D NCOA3 MAFK SP7 PRDM1 GLIS2 PKNOX1 HSPB8 NONHSAG012478.2 piR-45035-050 LOC100287653 ENSG00000256609 LOC105370024
GH12J118287 Enhancer 1 Ensembl ENCODE dbSUPER 5.1 -906.6 -906649 1.6 SMARCE1 TEAD4 CBFA2T2 SMARCA4 TRIM24 EGR1 GMEB1 IKZF1 DPF2 HDAC1 SUDS3 TAOK3 LOC100287653 RF00017-1299 HE856110 lnc-VSIG10-4
GH12J119191 Enhancer 0.3 Ensembl dbSUPER 6.6 -3.6 -3649 0.4 LOC100287653 ENSG00000256609 HSPB8 NONHSAG012478.2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100287653 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100287653 gene promoter:
  • AREB6
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • FOXI1
  • HFH-3
  • Ik-2

Genomic Locations for LOC100287653 Gene

Genomic Locations for LOC100287653 Gene
chr12:119,194,850-119,195,394
(GRCh38/hg38)
Size:
545 bases
Orientation:
Plus strand
chr12:119,632,655-119,633,199
(GRCh37/hg19)
Size:
545 bases
Orientation:
Plus strand

Genomic View for LOC100287653 Gene

Genes around LOC100287653 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100287653 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287653 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100287653 Gene

Proteins for LOC100287653 Gene

Post-translational modifications for LOC100287653 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100287653 Gene

Domains & Families for LOC100287653 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287653 Gene

Function for LOC100287653 Gene

Phenotypes From GWAS Catalog for LOC100287653 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287653 Gene

Localization for LOC100287653 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287653 Gene

Pathways & Interactions for LOC100287653 Gene

PathCards logo

SuperPathways for LOC100287653 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100287653 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100287653 Gene

Drugs & Compounds for LOC100287653 Gene

No Compound Related Data Available

Transcripts for LOC100287653 Gene

mRNA/cDNA for LOC100287653 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287653 Gene

No ASD Table

Relevant External Links for LOC100287653 Gene

GeneLoc Exon Structure for
LOC100287653

Expression for LOC100287653 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100287653 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100287653 Gene

This gene is overexpressed in Muscle - Skeletal (x16.7).
genes like me logo Genes that share expression patterns with LOC100287653: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287653 Gene

Orthologs for LOC100287653 Gene

Evolution for LOC100287653 Gene

ENSEMBL:
Gene Tree for LOC100287653 (if available)
TreeFam:
Gene Tree for LOC100287653 (if available)

No data available for Orthologs for LOC100287653 Gene

Paralogs for LOC100287653 Gene

No data available for Paralogs for LOC100287653 Gene

Variants for LOC100287653 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100287653 Gene

Disorders for LOC100287653 Gene

No disorders were found for LOC100287653 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287653 Gene

Publications for LOC100287653 Gene

No publications were found for LOC100287653 Gene.

No data available for External Links for LOC100287653 Gene

Products for LOC100287653 Gene

Sources for LOC100287653 Gene