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Aliases for LOC100287653 Gene
Aliases for LOC100287653 Gene
External Ids for LOC100287653 Gene
- Entrez Gene: 100287653
- Ensembl: ENSG00000213144
Previous GeneCards Identifiers for LOC100287653 Gene
- GC00U926093
- GC12P119636
Summaries for LOC100287653 Gene
GeneCards Summary for LOC100287653 Gene
LOC100287653 (PDGFA Associated Protein 1 Pseudogene) is a Pseudogene.
Additional gene information for LOC100287653 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287653 Gene
Genomics for LOC100287653 Gene
GeneHancer (GH) Regulatory Elements for LOC100287653 Gene
Promoters and enhancers for LOC100287653 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J119195 | Enhancer | 0.2 | FANTOM5 | 750.6 | +0.5 | 538 | 0.4 | LOC100287653 TMEM233 HSPB8 LOC105370026 | ||
| GH12J119196 | Enhancer | 0.2 | dbSUPER | 755.5 | +1.9 | 1878 | 1 | LOC100287653 LOC105370026 HSPB8 | ||
| GH12J119174 | Promoter/Enhancer | 2.1 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 7.1 | -15.1 | -15097 | 10.1 | POLR2A MNT SP1 ZNF280D NCOA3 MAFK SP7 PRDM1 GLIS2 PKNOX1 | HSPB8 NONHSAG012478.2 piR-45035-050 LOC100287653 ENSG00000256609 LOC105370024 | |
| GH12J118287 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 5.1 | -906.6 | -906649 | 1.6 | SMARCE1 TEAD4 CBFA2T2 SMARCA4 TRIM24 EGR1 GMEB1 IKZF1 DPF2 HDAC1 | SUDS3 TAOK3 LOC100287653 RF00017-1299 HE856110 lnc-VSIG10-4 | |
| GH12J119191 | Enhancer | 0.3 | Ensembl dbSUPER | 6.6 | -3.6 | -3649 | 0.4 | LOC100287653 ENSG00000256609 HSPB8 NONHSAG012478.2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100287653 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the LOC100287653 gene promoter:
-
- AREB6
- E2F
- E2F-1
- E2F-2
- E2F-3a
- E2F-4
- E2F-5
- FOXI1
- HFH-3
- Ik-2
Genomic Locations for LOC100287653 Gene
Genomic Locations for LOC100287653 Gene
- chr12:119,194,850-119,195,394
- (GRCh38/hg38)
- Size:
- 545 bases
- Orientation:
- Plus strand
- chr12:119,632,655-119,633,199
- (GRCh37/hg19)
- Size:
- 545 bases
- Orientation:
- Plus strand
Genomic View for LOC100287653 Gene
Genes around LOC100287653 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12q24.23 by Entrez Gene
- 12q24.23 by Ensembl
LOC100287653 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100287653 Gene
Proteins for LOC100287653 Gene
Post-translational modifications for LOC100287653 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100287653
- Origene Custom Protein Services for LOC100287653
No data available for DME Specific Peptides for LOC100287653 Gene
Domains & Families for LOC100287653 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287653 Gene
Function for LOC100287653 Gene
Phenotypes From GWAS Catalog for LOC100287653 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287653 Gene
Localization for LOC100287653 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287653 Gene
Transcripts for LOC100287653 Gene
mRNA/cDNA for LOC100287653 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000392530 545 bps (ENST00000392530.2)
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC100287653 Gene
- GeneLoc Exon Structure for
- LOC100287653
Expression for LOC100287653 Gene
mRNA differential expression in normal tissues according to GTEx for LOC100287653 Gene
This gene is overexpressed in Muscle - Skeletal (x16.7).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287653 Gene
Orthologs for LOC100287653 Gene
No data available for Orthologs for LOC100287653 Gene
Paralogs for LOC100287653 Gene
No data available for Paralogs for LOC100287653 Gene
Variants for LOC100287653 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100287653 Gene
Disorders for LOC100287653 Gene
No disorders were found for LOC100287653 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287653 Gene
Publications for LOC100287653 Gene
No publications were found for LOC100287653 Gene.
No data available for External Links for LOC100287653 Gene
Products for LOC100287653 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100287653
- Origene Custom Protein Services for LOC100287653
- Browse OriGene Inhibitory RNA Products For LOC100287653
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC100287653
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC100287653
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC100287653
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC100287653
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC100287653
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC100287653
Sources for LOC100287653 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource