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Aliases for LOC100287539 Gene
External Ids for LOC100287539 Gene
- NCBI Entrez Gene: 100287539
- Ensembl: ENSG00000266105
Previous GeneCards Identifiers for LOC100287539 Gene
- GC00U927732
- GC18P029546
Summaries for LOC100287539 Gene
GeneCards Summary for LOC100287539 Gene
LOC100287539 (Epsin 2 Pseudogene) is a Pseudogene.
Additional gene information for LOC100287539 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287539 Gene
Genomics for LOC100287539 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC100287539 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH18J031965 | Enhancer | 0.5 | Ensembl ENCODE | 250.7 | -1.3 | -1332 | 0.7 | SPI1 MEIS2 | LOC100287539 piR-50219-006 PGDP1 TRAPPC8 RF00017-2651 RNF125 RF00017-2648 | |
| GH18J031977 | Enhancer | 0.6 | ENCODE | 0.4 | +10.5 | 10483 | 0.2 | CTCF REST TRIM22 MAFF RAD21 SMC3 ZNF316 MAFG ZNF143 ZNF652 | HSALNG0120766 TRAPPC8 RNU6-1050P LOC100287539 RF00017-2651 RNF125 | |
| GH18J031978 | Enhancer | 0.4 | Ensembl | 0.4 | +10.1 | 10141 | 0.2 | CTCF ATF1 SMARCA4 | TRAPPC8 RNU6-1050P HSALNG0120766 LOC100287539 RF00017-2651 RNF125 | |
| GH18J031970 | Enhancer | 0.2 | Ensembl | 0.7 | +3.9 | 3941 | 0.2 | RNU6-1050P LOC100287539 HSALNG0120766 TRAPPC8 RF00017-2651 RNF125 RF00017-2648 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100287539 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC100287539 Gene
Latest Assembly
- chr18:31,966,960-31,967,545
- (GRCh38/hg38)
- Size:
- 586 bases
- Orientation:
- Plus strand
Previous Assembly
- chr18:29,546,923-29,547,508
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 586 bases
- Orientation:
- Plus strand
- chr18:29,546,923-29,547,508
- (GRCh37/hg19 by Ensembl)
- Size:
- 586 bases
- Orientation:
- Plus strand
Genomic View for LOC100287539 Gene
Genes around LOC100287539 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 18q12.1 by Entrez Gene
- 18q12.1 by Ensembl
LOC100287539 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100287539 Gene
Proteins for LOC100287539 Gene
Post-translational modifications for LOC100287539 Gene
No Post-translational modifications
Antibodies for research
Protein products for research
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100287539
- Origene Custom Protein Services for LOC100287539
Assay products for research
No data available for DME Specific Peptides for LOC100287539 Gene
Domains & Families for LOC100287539 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287539 Gene
Function for LOC100287539 Gene
Animal Models for research
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA products for research
Inhibitory RNAs for research
Clone products for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287539 Gene
Localization for LOC100287539 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287539 Gene
Transcripts for LOC100287539 Gene
mRNA/cDNA for LOC100287539 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000582538 586 nts (view in UCSC)
miRNA products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC100287539 Gene
- GeneLoc Exon Structure for
- LOC100287539
Expression for LOC100287539 Gene
mRNA differential expression in normal tissues according to GTEx for LOC100287539 Gene
This gene is overexpressed in Testis (x53.0).
Primer products for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287539 Gene
Orthologs for LOC100287539 Gene
No data available for Orthologs for LOC100287539 Gene
Paralogs for LOC100287539 Gene
No data available for Paralogs for LOC100287539 Gene
Variants for LOC100287539 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100287539 Gene
Disorders for LOC100287539 Gene
No disorders were found for LOC100287539 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287539 Gene
Publications for LOC100287539 Gene
No publications were found for LOC100287539 Gene.
No data available for Mastermind for LOC100287539 Gene
Products for LOC100287539 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100287539
- Origene Custom Protein Services for LOC100287539
- Browse OriGene Inhibitory RNA Products For LOC100287539
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC100287539
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC100287539
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC100287539
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC100287539
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC100287539
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC100287539
Sources for LOC100287539 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB