Aliases for LOC100287539 Gene

Aliases for LOC100287539 Gene

  • Epsin 2 Pseudogene 3
  • Epsin- Like Pseudogene 5
  • AC009831.2 5

External Ids for LOC100287539 Gene

Previous GeneCards Identifiers for LOC100287539 Gene

  • GC00U927732
  • GC18P029546

Summaries for LOC100287539 Gene

GeneCards Summary for LOC100287539 Gene

LOC100287539 (Epsin 2 Pseudogene) is a Pseudogene.

Additional gene information for LOC100287539 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287539 Gene

Genomics for LOC100287539 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100287539 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J031965 Enhancer 0.5 Ensembl ENCODE 250.7 -1.3 -1332 0.7 SPI1 MEIS2 LOC100287539 piR-50219-006 PGDP1 TRAPPC8 RF00017-2651 RNF125 RF00017-2648
GH18J031977 Enhancer 0.6 ENCODE 0.4 +10.5 10483 0.2 CTCF REST TRIM22 MAFF RAD21 SMC3 ZNF316 MAFG ZNF143 ZNF652 HSALNG0120766 TRAPPC8 RNU6-1050P LOC100287539 RF00017-2651 RNF125
GH18J031978 Enhancer 0.4 Ensembl 0.4 +10.1 10141 0.2 CTCF ATF1 SMARCA4 TRAPPC8 RNU6-1050P HSALNG0120766 LOC100287539 RF00017-2651 RNF125
GH18J031970 Enhancer 0.2 Ensembl 0.7 +3.9 3941 0.2 RNU6-1050P LOC100287539 HSALNG0120766 TRAPPC8 RF00017-2651 RNF125 RF00017-2648
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100287539 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100287539 Gene

Latest Assembly
chr18:31,966,960-31,967,545
(GRCh38/hg38)
Size:
586 bases
Orientation:
Plus strand

Previous Assembly
chr18:29,546,923-29,547,508
(GRCh37/hg19 by Entrez Gene)
Size:
586 bases
Orientation:
Plus strand

chr18:29,546,923-29,547,508
(GRCh37/hg19 by Ensembl)
Size:
586 bases
Orientation:
Plus strand

Genomic View for LOC100287539 Gene

Genes around LOC100287539 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100287539 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287539 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100287539 Gene

Proteins for LOC100287539 Gene

Post-translational modifications for LOC100287539 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100287539 Gene

Domains & Families for LOC100287539 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287539 Gene

Function for LOC100287539 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287539 Gene

Localization for LOC100287539 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287539 Gene

Pathways & Interactions for LOC100287539 Gene

PathCards logo

SuperPathways for LOC100287539 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100287539 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100287539 Gene

Drugs & Compounds for LOC100287539 Gene

No Compound Related Data Available

Transcripts for LOC100287539 Gene

mRNA/cDNA for LOC100287539 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287539 Gene

No ASD Table

Relevant External Links for LOC100287539 Gene

GeneLoc Exon Structure for
LOC100287539

Expression for LOC100287539 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100287539 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100287539 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with LOC100287539: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287539 Gene

Orthologs for LOC100287539 Gene

Evolution for LOC100287539 Gene

ENSEMBL:
Gene Tree for LOC100287539 (if available)
TreeFam:
Gene Tree for LOC100287539 (if available)

No data available for Orthologs for LOC100287539 Gene

Paralogs for LOC100287539 Gene

No data available for Paralogs for LOC100287539 Gene

Variants for LOC100287539 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100287539 Gene

Disorders for LOC100287539 Gene

No disorders were found for LOC100287539 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287539 Gene

Publications for LOC100287539 Gene

No publications were found for LOC100287539 Gene.

No data available for Mastermind for LOC100287539 Gene

Products for LOC100287539 Gene

Sources for LOC100287539 Gene