Aliases for LOC100287425 Gene

Aliases for LOC100287425 Gene

  • Short Transmembrane Mitochondrial Protein 1 Pseudogene 3

External Ids for LOC100287425 Gene

Previous GeneCards Identifiers for LOC100287425 Gene

  • GC02P203107
  • GC02P194952

Summaries for LOC100287425 Gene

GeneCards Summary for LOC100287425 Gene

LOC100287425 (Short Transmembrane Mitochondrial Protein 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100287425 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287425 Gene

Genomics for LOC100287425 Gene

GeneHancer (GH) Regulatory Elements for LOC100287425 Gene

Promoters and enhancers for LOC100287425 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J202236 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 -1.4 -1444 3.2 ZBTB40 ZNF217 EP300 POLR2G PHF8 ZFX POLR2A KDM6A ZBTB10 GABPA HSALNG0021598 LOC100287425 SUMO1 NOP58 NBEAL1 ENSG00000228513 RPL12P16 ENSG00000213090 CDK15 ENSG00000273456
GH02J202248 Enhancer 0.7 ENCODE 0.4 +10.1 10131 1.9 MYC USF1 RFX1 HDAC2 SIN3A TRIM28 FOS YY1 NANOG CEBPB SNORD70 SNORD70B RNU6-440P ENSG00000273456 FAM117B LOC100287425 NOP58
GH02J202251 Enhancer 0.4 Ensembl 0.4 +12.6 12642 1 ZNF335 ATF2 ZBTB6 SNORD70 SNORD70B RNU6-440P NOP58 LOC100287425
GH02J202261 Enhancer 0.3 Ensembl 0.4 +22.5 22541 0.4 CEBPB FAM117B ENSG00000226261 NOP58 LOC100287425
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100287425 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100287425 gene promoter:
  • ATF-2
  • c-Jun
  • CREB
  • deltaCREB

Genomic Locations for LOC100287425 Gene

Genomic Locations for LOC100287425 Gene
chr2:202,239,459-202,240,027
(GRCh38/hg38)
Size:
569 bases
Orientation:
Plus strand
chr2:203,104,182-203,104,750
(GRCh37/hg19)
Size:
569 bases
Orientation:
Plus strand

Genomic View for LOC100287425 Gene

Genes around LOC100287425 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100287425 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287425 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100287425 Gene

Proteins for LOC100287425 Gene

Post-translational modifications for LOC100287425 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100287425 Gene

Domains & Families for LOC100287425 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287425 Gene

Function for LOC100287425 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287425 Gene

Localization for LOC100287425 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287425 Gene

Pathways & Interactions for LOC100287425 Gene

PathCards logo

SuperPathways for LOC100287425 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100287425 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100287425 Gene

Drugs & Compounds for LOC100287425 Gene

No Compound Related Data Available

Transcripts for LOC100287425 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287425 Gene

No ASD Table

Relevant External Links for LOC100287425 Gene

GeneLoc Exon Structure for
LOC100287425

No data available for mRNA/cDNA for LOC100287425 Gene

Expression for LOC100287425 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100287425 Gene

This gene is overexpressed in Testis (x53.0).

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287425 Gene

Orthologs for LOC100287425 Gene

No data available for Orthologs and Evolution for LOC100287425 Gene

Paralogs for LOC100287425 Gene

No data available for Paralogs for LOC100287425 Gene

Variants for LOC100287425 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100287425 Gene

Disorders for LOC100287425 Gene

No disorders were found for LOC100287425 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287425 Gene

Publications for LOC100287425 Gene

No publications were found for LOC100287425 Gene.

No data available for Mastermind for LOC100287425 Gene

Products for LOC100287425 Gene

Sources for LOC100287425 Gene