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Aliases for LOC100287329 Gene

Subcategory (RNA class) for LOC100287329 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100287329 Gene

  • Uncharacterized LOC100287329 3

External Ids for LOC100287329 Gene

Previous GeneCards Identifiers for LOC100287329 Gene

  • GC00U926400
  • GC06M031527
  • GC06M031314
  • GC06Mj31554
  • GC06Mk31521
  • GC06U903219
  • GC06M031560
  • GC06M031571
  • GC06M031593
  • GC06M031810
  • GC06M031831
  • GC06M031878
  • GC06M031917

Summaries for LOC100287329 Gene

GeneCards Summary for LOC100287329 Gene

LOC100287329 (Uncharacterized LOC100287329) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100287329 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100287329 Gene

Genomics for LOC100287329 Gene

GeneHancer (GH) Regulatory Elements for LOC100287329 Gene

Promoters and enhancers for LOC100287329 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J031567 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.7 -5721 22.2 HDGF PKNOX1 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 TNF ATP6V1G2 LST1 GC06P032155 GC06P032156 GC06P032157 GC06P032158 GC06P032160 GC06P032161 GC06P032163
GH06J031545 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 +25.2 25166 3.2 CLOCK MLX YBX1 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 NFKBIL1 ATP6V1G2 ATP6V1G2-DDX39B DDX39B ATF6B LY6G5B LSM2 DHX16 MDC1 PPP1R10
GH06J031563 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.4 +9.2 9221 1.6 HDGF ATF1 ARNT NCOA2 TCF12 GATA2 E2F8 FOS NCOA1 MEF2D TNF MICB BAG6 CCHCR1 CSNK2B DHX16 ATP6V1G2 HLA-C HCG23 HLA-B
GH06J031557 Enhancer 1.2 Ensembl ENCODE 0.4 +13.1 13107 4.2 HDGF ATF1 SMAD1 IRF4 NCOA2 TCF12 E2F8 ZNF207 ZNF143 ATF7 LTA CSNK2B DDX39B LST1 NCR3 UQCRHP1 AIF1 LTB SNORD117 PSORS1C2
GH06J031562 Enhancer 0.8 FANTOM5 0.4 +10.5 10458 0.4 EBF1 BATF ZFHX2 EED ATF7 ETV6 IKZF2 RUNX3 CREM EGR2 LTA TNF ATP6V1G2 STK19 HLA-B LST1 HSPA1B LOC100287329
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100287329 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100287329 gene promoter:
  • AP-1
  • p53
  • c-Jun
  • c-Fos
  • ATF-2

Genomic Locations for LOC100287329 Gene

Genomic Locations for LOC100287329 Gene
chr6:31,548,402-31,572,698
(GRCh38/hg38)
Size:
24,297 bases
Orientation:
Minus strand
chr6:31,527,348-31,540,474
(GRCh37/hg19)
Size:
13,127 bases
Orientation:
Minus strand

Genomic View for LOC100287329 Gene

Genes around LOC100287329 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100287329 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287329 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for LOC100287329 Gene

Post-translational modifications for LOC100287329 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100287329 Gene

Domains & Families for LOC100287329 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100287329 Gene

Function for LOC100287329 Gene

Phenotypes From GWAS Catalog for LOC100287329 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287329 Gene

Localization for LOC100287329 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287329 Gene

Pathways & Interactions for LOC100287329 Gene

SuperPathways for LOC100287329 Gene

No Data Available

Interacting Proteins for LOC100287329 Gene

Gene Ontology (GO) - Biological Process for LOC100287329 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100287329 Gene

Drugs & Compounds for LOC100287329 Gene

No Compound Related Data Available

Transcripts for LOC100287329 Gene

mRNA/cDNA for LOC100287329 Gene

(9) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for LOC100287329 Gene

Uncharacterized LOC100287329:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287329 Gene

No ASD Table

Relevant External Links for LOC100287329 Gene

GeneLoc Exon Structure for
LOC100287329

Expression for LOC100287329 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100287329 Gene

mRNA expression in normal human tissues for LOC100287329 Gene

SOURCE GeneReport for Unigene cluster for LOC100287329 Gene:

Hs.694620
genes like me logo Genes that share expression patterns with LOC100287329: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287329 Gene

Orthologs for LOC100287329 Gene

No data available for Orthologs and Evolution for LOC100287329 Gene

Paralogs for LOC100287329 Gene

No data available for Paralogs for LOC100287329 Gene

Variants for LOC100287329 Gene

Sequence variations from dbSNP and Humsavar for LOC100287329 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1041981 risk-factor, Myocardial infarction 31,573,007(-) C/A upstream_transcript_variant
rs2239704 risk-factor, Leprosy, early-onset, susceptibility to 31,572,364(-) A/C intron_variant
rs879567734 risk-factor, Leprosy, early-onset, susceptibility to 31,572,364(-) A/ intron_variant
rs909253 risk-factor, Myocardial infarction, Psoriatic arthritis, susceptibility to 31,572,536(-) A/G intron_variant
rs1000033668 -- 31,564,237(-) C/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100287329 Gene

Disorders for LOC100287329 Gene

Additional Disease Information for LOC100287329

No disorders were found for LOC100287329 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100287329 Gene

Publications for LOC100287329 Gene

No publications were found for LOC100287329 Gene.

Products for LOC100287329 Gene

Sources for LOC100287329 Gene

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