LOC100287042 Gene (RNA Gene)

Uncharacterized LOC100287042

GC17P075271
GIFtS:
8
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Aliases for LOC100287042 Gene

Subcategory (RNA class) for LOC100287042 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC100287042 Gene

  • Uncharacterized LOC100287042 3
  • NONHSAG022743.2 91

External Ids for LOC100287042 Gene

Previous GeneCards Identifiers for LOC100287042 Gene

  • GC00U927486
  • GC17P073268

Summaries for LOC100287042 Gene

GeneCards Summary for LOC100287042 Gene

LOC100287042 (Uncharacterized LOC100287042) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100287042 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287042 Gene

Genomics for LOC100287042 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100287042 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J075269 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.3 -341 4.3 SP1 HNRNPL GATAD2A CTCF PRDM10 ZNF629 NFKBIZ ZNF692 POLR2A BACH1 ENSG00000263843 LOC100287042 MIF4GD lnc-SLC25A19-3 NUP85 TRIM65 NT5C UNK NAT9 ENSG00000266980
GH17J075273 Enhancer 0.8 ENCODE 0.7 +3.0 3000 0.9 PRDM10 ZNF629 JUND PATZ1 REST HDAC1 ZNF600 POLR2A MTA3 CEBPB NUP85 ENSG00000263843 LOC100287042 MIF4GD SLC25A19 lnc-MIF4GD-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100287042 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100287042 gene promoter:
  • AP-4
  • c-Ets-1
  • c-Myb
  • E47
  • E4BP4
  • Lmo2
  • Pax-2
  • Pax-2a

Genomic Locations for LOC100287042 Gene

Genomic Locations for LOC100287042 Gene
chr17:75,271,299-75,273,895
(GRCh38/hg38)
Size:
2,597 bases
Orientation:
Plus strand
chr17:73,267,380-73,269,976
(GRCh37/hg19)
Size:
2,597 bases
Orientation:
Plus strand

Genomic View for LOC100287042 Gene

Genes around LOC100287042 on UCSC Golden Path with GeneCards custom track
LOC100287042 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100287042 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287042 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100287042 Gene

Proteins for LOC100287042 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100287042 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100287042 Gene

Domains & Families for LOC100287042 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287042 Gene

Function for LOC100287042 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287042 Gene

Localization for LOC100287042 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287042 Gene

Pathways & Interactions for LOC100287042 Gene

PathCards logo

SuperPathways for LOC100287042 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100287042 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100287042 Gene

Drugs & Compounds for LOC100287042 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC100287042 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100287042 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075AA2D_9606 lncRNA 2597 2

RefSeq: NR_036520,

NONCODE: NONHSAT055876.2,

LOC100287042 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100287042 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287042 Gene

No ASD Table

Relevant External Links for LOC100287042 Gene

GeneLoc Exon Structure for
LOC100287042

Expression for LOC100287042 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100287042 Gene

mRNA expression in normal human tissues for LOC100287042 Gene
mRNA expression by GTEx for LOC100287042 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100287042

SOURCE GeneReport for Unigene cluster for LOC100287042 Gene:

Hs.735738
genes like me logo Genes that share expression patterns with LOC100287042: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287042 Gene

Orthologs for LOC100287042 Gene

No data available for Orthologs and Evolution for LOC100287042 Gene

Paralogs for LOC100287042 Gene

No data available for Paralogs for LOC100287042 Gene

Variants for LOC100287042 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100287042 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
692005 Pathogenic: Amish lethal microcephaly 75,273,640(+) C/G SPLICE_ACCEPTOR_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
755591 Likely Benign: not provided 75,273,535(+) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
785582 Likely Benign: not provided 75,273,508(+) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
889454 Uncertain Significance: Amish lethal microcephaly 75,273,043(+) G/A NON_CODING_TRANSCRIPT_VARIANT,THREE_PRIME_UTR_VARIANT
889455 Uncertain Significance: Amish lethal microcephaly 75,273,067(+) G/A NON_CODING_TRANSCRIPT_VARIANT,THREE_PRIME_UTR_VARIANT

Additional dbSNP identifiers (rs#s) for LOC100287042 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100287042 Gene

Variant ID Type Subtype PubMed ID
nsv1066312 CNV gain 25217958
nsv510727 CNV deletion 20534489
nsv576027 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100287042 Gene

Disorders for LOC100287042 Gene

No disorders were found for LOC100287042 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287042 Gene

Publications for LOC100287042 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100287042 Gene

Products for LOC100287042 Gene

Sources for LOC100287042 Gene