LOC100287036 Gene (RNA Gene)

Uncharacterized LOC100287036

GC16P089419
GIFtS:
14
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Aliases for LOC100287036 Gene

Subcategory (RNA class) for LOC100287036 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC100287036 Gene

  • Uncharacterized LOC100287036 3 5
  • HSALNG0113602 164
  • Lnc-ZNF778-2 165
  • AC137932.2 5

External Ids for LOC100287036 Gene

Previous GeneCards Identifiers for LOC100287036 Gene

  • GC00U924892
  • GC16P089387
  • GC16P089394

Summaries for LOC100287036 Gene

GeneCards Summary for LOC100287036 Gene

LOC100287036 (Uncharacterized LOC100287036) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100287036 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287036 Gene

Genomics for LOC100287036 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100287036 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100287036 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC100287036

Top Transcription factor binding sites by QIAGEN in the LOC100287036 gene promoter:
  • AP-1
  • CBF(2)
  • CUTL1
  • FAC1
  • NF-Y
  • Pax-2
  • Pax-2a
  • Pax-4a
  • YY1

Genomic Locations for LOC100287036 Gene

Genomic Locations for LOC100287036 Gene
chr16:89,320,452-89,329,944
(GRCh38/hg38)
Size:
9,493 bases
Orientation:
Plus strand
chr16:89,387,541-89,391,518
(GRCh37/hg19)
Size:
3,978 bases
Orientation:
Plus strand

Genomic View for LOC100287036 Gene

Genes around LOC100287036 on UCSC Golden Path with GeneCards custom track
LOC100287036 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100287036 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287036 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100287036 Gene

Proteins for LOC100287036 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100287036 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100287036 Gene

Domains & Families for LOC100287036 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287036 Gene

Function for LOC100287036 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC100287036 Gene

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100287036

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287036 Gene

Localization for LOC100287036 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287036 Gene

Pathways & Interactions for LOC100287036 Gene

PathCards logo

SuperPathways for LOC100287036 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100287036 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100287036 Gene

Drugs & Compounds for LOC100287036 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC100287036 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100287036 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000076F116_9606 lncRNA 953 3

Ensembl: ENST00000565667 (view in UCSC) ,

LncBook: HSALNT0235470,

LNCipedia: lnc-ZNF778-2:10,

URS00005B7FED_9606 lncRNA 1205 2

Ensembl: ENST00000562995 (view in UCSC) ,

LNCipedia: lnc-ZNF778-2:8,

URS0000D5DB3B_9606 lncRNA 8089 1

LNCipedia: lnc-ZNF778-2:6,

URS0000D5E11E_9606 lncRNA 7934 1

LNCipedia: lnc-ZNF778-2:5,

URS0000D5990C_9606 lncRNA 6875 1

LNCipedia: lnc-ZNF778-2:7,

LOC100287036 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100287036 Gene

1 NCBI additional mRNA sequence :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100287036

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287036 Gene

No ASD Table

Relevant External Links for LOC100287036 Gene

GeneLoc Exon Structure for
LOC100287036

Expression for LOC100287036 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100287036 Gene

mRNA expression in normal human tissues for LOC100287036 Gene
mRNA expression by GTEx for LOC100287036 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100287036

SOURCE GeneReport for Unigene cluster for LOC100287036 Gene:

Hs.656995
genes like me logo Genes that share expression patterns with LOC100287036: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287036 Gene

Orthologs for LOC100287036 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC100287036 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia LOC100613437 30
  • 97.6 (n)
Species where no ortholog for LOC100287036 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LOC100287036 Gene

ENSEMBL:
Gene Tree for LOC100287036 (if available)
TreeFam:
Gene Tree for LOC100287036 (if available)

Paralogs for LOC100287036 Gene

No data available for Paralogs for LOC100287036 Gene

Variants for LOC100287036 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100287036 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
rs147430058 Likely Benign: not provided 89,324,332(+) C/T INTRON_VARIANT
rs7186101 Likely Benign: not provided 89,324,569(+) C/T INTRON_VARIANT
rs80051617 Benign: not provided 89,324,500(+) G/A INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for LOC100287036 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100287036 Gene

Variant ID Type Subtype PubMed ID
esv2763149 CNV gain 21179565
esv3639574 CNV gain 21293372
esv998083 CNV deletion 20482838
nsv1138484 CNV deletion 24896259
nsv428331 CNV gain+loss 18775914
nsv469681 CNV loss 16826518
nsv482951 CNV loss 15286789
nsv573674 CNV gain 21841781
nsv573735 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100287036 Gene

Disorders for LOC100287036 Gene

Additional Disease Information for LOC100287036

Open Targets Platform

No disorders were found for LOC100287036 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100287036 Gene

Publications for LOC100287036 Gene

No publications were found for LOC100287036 Gene.

No data available for Mastermind for LOC100287036 Gene

Products for LOC100287036 Gene

Sources for LOC100287036 Gene