Aliases for LOC100287010 Gene

Subcategory (RNA class) for LOC100287010 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LOC100287010 Gene

  • Uncharacterized LOC100287010 3
  • Lnc-TGFBRAP1-18 168
  • NONHSAG028792 92

External Ids for LOC100287010 Gene

Previous GeneCards Identifiers for LOC100287010 Gene

  • GC00U930354
  • GC02M104995
  • GC02M098760

Summaries for LOC100287010 Gene

GeneCards Summary for LOC100287010 Gene

LOC100287010 (Uncharacterized LOC100287010) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100287010 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287010 Gene

Genomics for LOC100287010 Gene

GeneHancer (GH) Regulatory Elements for LOC100287010 Gene

Promoters and enhancers for LOC100287010 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J104408 Enhancer 1 UCNEbase CraniofacialAtlas dbSUPER 500.7 +0.0 44 0.7 TRIM28 SMC3 ZBTB17 TCF7L2 SMARCA4 GATA2 POLR2A ENSG00000227157 LOC100287010
GH02J104406 Enhancer 0.5 dbSUPER 500.7 +1.6 1608 1.3 MXI1 ZBTB17 SMARCA4 RFX5 CHD2 ZNF660 PKNOX1 ENSG00000227157 LOC100287010
GH02J104378 Promoter/Enhancer 1 ENCODE CraniofacialAtlas 0.3 +29.3 29279 0.6 ZBTB40 ZNF217 SIX5 GABPA NFYB MXI1 HCFC1 SMC3 POLR2A SPI1 lnc-TGFBRAP1-11 AHCYP3 LOC100287010
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100287010 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100287010 gene promoter:
  • FOXL1
  • Meis-1
  • Meis-1a
  • Meis-1b
  • NF-AT
  • NF-AT2
  • Pax-4a
  • POU2F1
  • POU2F1a
  • TBP

Genomic Locations for LOC100287010 Gene

Genomic Locations for LOC100287010 Gene
chr2:104,378,850-104,408,332
(GRCh38/hg38)
Size:
29,483 bases
Orientation:
Minus strand
chr2:104,995,308-105,036,383
(GRCh37/hg19)
Size:
41,076 bases
Orientation:
Minus strand

Genomic View for LOC100287010 Gene

Genes around LOC100287010 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100287010 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287010 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100287010 Gene

Proteins for LOC100287010 Gene

Post-translational modifications for LOC100287010 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100287010 Gene

Domains & Families for LOC100287010 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287010 Gene

Function for LOC100287010 Gene

Phenotypes From GWAS Catalog for LOC100287010 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287010 Gene

Localization for LOC100287010 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287010 Gene

Pathways & Interactions for LOC100287010 Gene

PathCards logo

SuperPathways for LOC100287010 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100287010 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100287010 Gene

Drugs & Compounds for LOC100287010 Gene

No Compound Related Data Available

Transcripts for LOC100287010 Gene

mRNA/cDNA for LOC100287010 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287010 Gene

No ASD Table

Relevant External Links for LOC100287010 Gene

GeneLoc Exon Structure for
LOC100287010

Expression for LOC100287010 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100287010

SOURCE GeneReport for Unigene cluster for LOC100287010 Gene:

Hs.694603
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287010 Gene

Orthologs for LOC100287010 Gene

No data available for Orthologs and Evolution for LOC100287010 Gene

Paralogs for LOC100287010 Gene

No data available for Paralogs for LOC100287010 Gene

Variants for LOC100287010 Gene

Additional dbSNP identifiers (rs#s) for LOC100287010 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100287010 Gene

Variant ID Type Subtype PubMed ID
esv3591816 CNV loss 21293372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100287010 Gene

Disorders for LOC100287010 Gene

No disorders were found for LOC100287010 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287010 Gene

Publications for LOC100287010 Gene

No publications were found for LOC100287010 Gene.

No data available for Mastermind for LOC100287010 Gene

Products for LOC100287010 Gene

Sources for LOC100287010 Gene