Aliases for LOC100286942 Gene

Aliases for LOC100286942 Gene

  • Ribosomal Protein S15a Pseudogene 3

External Ids for LOC100286942 Gene

Previous GeneCards Identifiers for LOC100286942 Gene

  • GC00U925012
  • GC15M068266

Summaries for LOC100286942 Gene

GeneCards Summary for LOC100286942 Gene

LOC100286942 (Ribosomal Protein S15a Pseudogene) is a Pseudogene.

Additional gene information for LOC100286942 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100286942 Gene

Genomics for LOC100286942 Gene

GeneHancer (GH) Regulatory Elements for LOC100286942 Gene

Promoters and enhancers for LOC100286942 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J067977 Enhancer 0.6 Ensembl 0.7 -2.9 -2874 0.2 ZNF644 IRF1 ZNF395 MEIS2 AFF1 ID3 IKZF1 PKNOX1 ZNF740 ZNF639 LOC100286942 ENSG00000260109 lnc-PIAS1-1
GH15J067981 Enhancer 0.5 Ensembl 0.4 -7.0 -6974 0.8 TEAD4 RBM25 ZMYM3 ZFP36 ESRRA ZNF580 PIAS1 ENSG00000260109 lnc-PIAS1-1 LOC100286942
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100286942 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100286942 gene promoter:
  • AML1a
  • Brachyury
  • E47
  • Egr-4
  • HNF-4alpha1
  • HNF-4alpha2
  • MyoD
  • Sox9
  • SRF
  • SRF (504 AA)

Genomic Locations for LOC100286942 Gene

Genomic Locations for LOC100286942 Gene
chr15:67,973,817-67,974,627
(GRCh38/hg38)
Size:
811 bases
Orientation:
Minus strand
chr15:68,266,155-68,266,965
(GRCh37/hg19)
Size:
811 bases
Orientation:
Minus strand

Genomic View for LOC100286942 Gene

Genes around LOC100286942 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100286942 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100286942 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100286942 Gene

Proteins for LOC100286942 Gene

Post-translational modifications for LOC100286942 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100286942 Gene

Domains & Families for LOC100286942 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100286942 Gene

Function for LOC100286942 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100286942 Gene

Localization for LOC100286942 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100286942 Gene

Pathways & Interactions for LOC100286942 Gene

PathCards logo

SuperPathways for LOC100286942 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100286942 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100286942 Gene

Drugs & Compounds for LOC100286942 Gene

No Compound Related Data Available

Transcripts for LOC100286942 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100286942 Gene

No ASD Table

Relevant External Links for LOC100286942 Gene

GeneLoc Exon Structure for
LOC100286942

No data available for mRNA/cDNA for LOC100286942 Gene

Expression for LOC100286942 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100286942 Gene

genes like me logo Genes that share expression patterns with LOC100286942: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100286942 Gene

Orthologs for LOC100286942 Gene

No data available for Orthologs and Evolution for LOC100286942 Gene

Paralogs for LOC100286942 Gene

No data available for Paralogs for LOC100286942 Gene

Variants for LOC100286942 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100286942 Gene

Disorders for LOC100286942 Gene

No disorders were found for LOC100286942 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100286942 Gene

Publications for LOC100286942 Gene

No publications were found for LOC100286942 Gene.

No data available for Mastermind for LOC100286942 Gene

Products for LOC100286942 Gene

Sources for LOC100286942 Gene