Aliases for LOC100270746 Gene

Subcategory (RNA class) for LOC100270746 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC100270746 Gene

  • Uncharacterized LOC100270746 3
  • Lnc-HIST1H2BJ-8 165
  • NONHSAG043263.2 91

External Ids for LOC100270746 Gene

Previous GeneCards Identifiers for LOC100270746 Gene

  • GC06U901635
  • GC06M026987
  • GC06M027019

Summaries for LOC100270746 Gene

GeneCards Summary for LOC100270746 Gene

LOC100270746 (Uncharacterized LOC100270746) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LOC100270746 Gene

Additional gene information for LOC100270746 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LOC100270746 Gene

Genomics for LOC100270746 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100270746 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J027018 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 600.7 +1.8 1836 2.8 CEBPG CREB1 PRDM10 REST ZNF629 RFX1 LEF1 IKZF1 ZNF692 ZHX2 ENSG00000287966 LOC100270746 TRI-TAT2-2 ENSG00000261584 BTN2A2 ZNF322 HMGN4 LINC00240 BTN2A1 piR-59297-570
GH06J027025 Enhancer 0.2 Ensembl 0.7 -4.1 -4064 0.2 BTN2A2 LOC100270746 lnc-HIST1H2BJ-7 LINC00240 H2BC11 ZNF322
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100270746 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100270746 gene promoter:
  • aMEF-2
  • c-Myc
  • E47
  • Max1
  • MEF-2
  • MEF-2A
  • POU3F2
  • POU3F2 (N-Oct-5a)
  • POU3F2 (N-Oct-5b)
  • Tal-1

Genomic Locations for LOC100270746 Gene

Genomic Locations for LOC100270746 Gene
chr6:27,018,079-27,021,637
(GRCh38/hg38)
Size:
3,559 bases
Orientation:
Minus strand
chr6:26,987,145-26,988,085
(GRCh37/hg19)
Size:
941 bases
Orientation:
Minus strand

Genomic View for LOC100270746 Gene

Genes around LOC100270746 on UCSC Golden Path with GeneCards custom track
LOC100270746 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100270746 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100270746 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100270746 Gene

Proteins for LOC100270746 Gene

Post-translational modifications for LOC100270746 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100270746 Gene

Domains & Families for LOC100270746 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100270746 Gene

Function for LOC100270746 Gene

Phenotypes From GWAS Catalog for LOC100270746 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100270746 Gene

Localization for LOC100270746 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100270746 Gene

Pathways & Interactions for LOC100270746 Gene

PathCards logo

SuperPathways for LOC100270746 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100270746 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100270746 Gene

Drugs & Compounds for LOC100270746 Gene

No Compound Related Data Available

Transcripts for LOC100270746 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100270746 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075CF89_9606 lncRNA 941 1

RefSeq: NR_026776,

URS00008B5CD8_9606 lncRNA 3559 2

LNCipedia: lnc-HIST1H2BJ-8:1,

NONCODE: NONHSAT108322.2,

URS0000D576C4_9606 lncRNA 1246 1

LNCipedia: lnc-HIST1H2BJ-8:3,

URS00008BE862_9606 lncRNA 941 1

LNCipedia: lnc-HIST1H2BJ-8:2,

LOC100270746 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100270746 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100270746 Gene

No ASD Table

Relevant External Links for LOC100270746 Gene

GeneLoc Exon Structure for
LOC100270746

Expression for LOC100270746 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100270746

SOURCE GeneReport for Unigene cluster for LOC100270746 Gene:

Hs.590428
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100270746 Gene

Orthologs for LOC100270746 Gene

No data available for Orthologs and Evolution for LOC100270746 Gene

Paralogs for LOC100270746 Gene

No data available for Paralogs for LOC100270746 Gene

Variants for LOC100270746 Gene

Additional dbSNP identifiers (rs#s) for LOC100270746 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100270746 Gene

Variant ID Type Subtype PubMed ID
dgv10n29 CNV gain 16826518
esv2759410 CNV gain 17122850
esv28434 CNV gain+loss 19812545
nsv1029124 CNV loss 25217958
nsv469625 CNV gain 16826518
nsv471636 CNV gain+loss 15918152
nsv830616 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100270746 Gene

Disorders for LOC100270746 Gene

No disorders were found for LOC100270746 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100270746 Gene

Publications for LOC100270746 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LOC100270746 Gene

Products for LOC100270746 Gene

Sources for LOC100270746 Gene