Aliases for LOC100270746 Gene

Subcategory (RNA class) for LOC100270746 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100270746 Gene

  • Uncharacterized LOC100270746 3
  • Lnc-HIST1H2BJ-8 170
  • NONHSAG043263 94

External Ids for LOC100270746 Gene

Previous GeneCards Identifiers for LOC100270746 Gene

  • GC06U901635
  • GC06M026987

Summaries for LOC100270746 Gene

GeneCards Summary for LOC100270746 Gene

LOC100270746 (Uncharacterized LOC100270746) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LOC100270746 Gene

Additional gene information for LOC100270746 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LOC100270746 Gene

Genomics for LOC100270746 Gene

GeneHancer (GH) Regulatory Elements for LOC100270746 Gene

Promoters and enhancers for LOC100270746 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J027018 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 750.6 +1.8 1836 2.8 GTF3C2 ZNF24 ZBTB40 SMARCE1 POLR2A TCF7L2 MYC CC2D1A ETV6 ELF1 ENSG00000287966 LOC100270746 TRI-TAT2-2 ABT1 BTN2A3P HMGN4 ZNF322 ENSG00000261584 ZNF204P ZNF391
GH06J027025 Enhancer 0.2 Ensembl 0.6 -4.1 -4064 0.2 BTN2A2 LOC100270746 lnc-HIST1H2BJ-7 LINC00240
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100270746 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100270746 gene promoter:
  • aMEF-2
  • c-Myc
  • E47
  • Max1
  • MEF-2
  • MEF-2A
  • POU3F2
  • POU3F2 (N-Oct-5a)
  • POU3F2 (N-Oct-5b)
  • Tal-1

Genomic Locations for LOC100270746 Gene

Genomic Locations for LOC100270746 Gene
chr6:27,018,079-27,021,637
(GRCh38/hg38)
Size:
3,559 bases
Orientation:
Minus strand
chr6:26,987,145-26,988,085
(GRCh37/hg19)
Size:
941 bases
Orientation:
Minus strand

Genomic View for LOC100270746 Gene

Genes around LOC100270746 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100270746 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100270746 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100270746 Gene

Proteins for LOC100270746 Gene

Post-translational modifications for LOC100270746 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100270746 Gene

Domains & Families for LOC100270746 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100270746 Gene

Function for LOC100270746 Gene

Phenotypes From GWAS Catalog for LOC100270746 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100270746 Gene

Localization for LOC100270746 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100270746 Gene

Pathways & Interactions for LOC100270746 Gene

PathCards logo

SuperPathways for LOC100270746 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100270746 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100270746 Gene

Drugs & Compounds for LOC100270746 Gene

No Compound Related Data Available

Transcripts for LOC100270746 Gene

mRNA/cDNA for LOC100270746 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) RNACentral transcripts :
(1) NONCODE transcripts :
(3) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100270746 Gene

No ASD Table

Relevant External Links for LOC100270746 Gene

GeneLoc Exon Structure for
LOC100270746

Expression for LOC100270746 Gene

SOURCE GeneReport for Unigene cluster for LOC100270746 Gene:

Hs.590428
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100270746 Gene

Orthologs for LOC100270746 Gene

No data available for Orthologs and Evolution for LOC100270746 Gene

Paralogs for LOC100270746 Gene

No data available for Paralogs for LOC100270746 Gene

Variants for LOC100270746 Gene

Sequence variations from dbSNP and Humsavar for LOC100270746 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000193426 -- 27,020,225(-) G/A/T non_coding_transcript_variant
rs1001863501 -- 27,021,952(-) TTTTTTTTTT/TTTTTTTTT/TTTTTTTTTTT upstream_transcript_variant
rs1001974164 -- 27,021,510(-) A/C/G upstream_transcript_variant
rs1003982701 -- 27,020,617(-) T/A upstream_transcript_variant
rs1005315241 -- 27,019,507(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100270746 Gene

Variant ID Type Subtype PubMed ID
dgv10n29 CNV gain 16826518
esv2759410 CNV gain 17122850
esv28434 CNV gain+loss 19812545
nsv1029124 CNV loss 25217958
nsv469625 CNV gain 16826518
nsv471636 CNV gain+loss 15918152
nsv830616 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100270746 Gene

Disorders for LOC100270746 Gene

No disorders were found for LOC100270746 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100270746 Gene

Publications for LOC100270746 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for LOC100270746 Gene

Products for LOC100270746 Gene

Sources for LOC100270746 Gene