Aliases for LOC100270746 Gene
Subcategory (RNA class) for LOC100270746 Gene
lncRNA
Quality Score for this RNA gene is
13
External Ids for LOC100270746 Gene
- Entrez Gene: 100270746
Previous GeneCards Identifiers for LOC100270746 Gene
- GC06U901635
- GC06M026987
Summaries for LOC100270746 Gene
GeneCards Summary for LOC100270746 Gene
LOC100270746 (Uncharacterized LOC100270746) is an RNA Gene, and is affiliated with the lncRNA class.
Rfam classification for LOC100270746 Gene
-
tRNA
Additional gene information for LOC100270746 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LOC100270746 Gene
Genomics for LOC100270746 Gene
GeneHancer (GH) Regulatory Elements for LOC100270746 Gene
Promoters and enhancers for LOC100270746 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH06J027018 | Promoter/Enhancer | 1.7 | Ensembl ENCODE CraniofacialAtlas | 750.6 | +1.8 | 1836 | 2.8 | GTF3C2 ZNF24 ZBTB40 SMARCE1 POLR2A TCF7L2 MYC CC2D1A ETV6 ELF1 | ENSG00000287966 LOC100270746 TRI-TAT2-2 ABT1 BTN2A3P HMGN4 ZNF322 ENSG00000261584 ZNF204P ZNF391 | |
| GH06J027025 | Enhancer | 0.2 | Ensembl | 0.6 | -4.1 | -4064 | 0.2 | BTN2A2 LOC100270746 lnc-HIST1H2BJ-7 LINC00240 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100270746 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the LOC100270746 gene promoter:
-
- aMEF-2
- c-Myc
- E47
- Max1
- MEF-2
- MEF-2A
- POU3F2
- POU3F2 (N-Oct-5a)
- POU3F2 (N-Oct-5b)
- Tal-1
Genomic Locations for LOC100270746 Gene
Genomic Locations for LOC100270746 Gene
- chr6:27,018,079-27,021,637
- (GRCh38/hg38)
- Size:
- 3,559 bases
- Orientation:
- Minus strand
- chr6:26,987,145-26,988,085
- (GRCh37/hg19)
- Size:
- 941 bases
- Orientation:
- Minus strand
Genomic View for LOC100270746 Gene
Genes around LOC100270746 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6p22.2 by Entrez Gene
LOC100270746 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100270746 Gene
Proteins for LOC100270746 Gene
Post-translational modifications for LOC100270746 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100270746
- Origene Custom Protein Services for LOC100270746
No data available for DME Specific Peptides for LOC100270746 Gene
Domains & Families for LOC100270746 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100270746 Gene
Function for LOC100270746 Gene
Phenotypes From GWAS Catalog for LOC100270746 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100270746 Gene
Localization for LOC100270746 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100270746 Gene
Transcripts for LOC100270746 Gene
mRNA/cDNA for LOC100270746 Gene
- (1) REFSEQ mRNAs :
- (2) Additional mRNA sequences :
- (4) RNACentral transcripts :
- (1) NONCODE transcripts :
- (3) LNCipedia transcripts :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC100270746 Gene
- GeneLoc Exon Structure for
- LOC100270746
Expression for LOC100270746 Gene
SOURCE GeneReport for Unigene cluster for LOC100270746 Gene:
Hs.590428
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100270746 Gene
Orthologs for LOC100270746 Gene
No data available for Orthologs and Evolution for LOC100270746 Gene
Paralogs for LOC100270746 Gene
No data available for Paralogs for LOC100270746 Gene
Variants for LOC100270746 Gene
| SNP ID | Clin | Chr 06 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000193426 | -- | 27,020,225(-) | G/A/T | non_coding_transcript_variant | |
| rs1001863501 | -- | 27,021,952(-) | TTTTTTTTTT/TTTTTTTTT/TTTTTTTTTTT | upstream_transcript_variant | |
| rs1001974164 | -- | 27,021,510(-) | A/C/G | upstream_transcript_variant | |
| rs1003982701 | -- | 27,020,617(-) | T/A | upstream_transcript_variant | |
| rs1005315241 | -- | 27,019,507(-) | C/T | non_coding_transcript_variant |
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100270746 Gene
Disorders for LOC100270746 Gene
No disorders were found for LOC100270746 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100270746 Gene
Publications for LOC100270746 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
No data available for External Links for LOC100270746 Gene
Products for LOC100270746 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100270746
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- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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Sources for LOC100270746 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource