Aliases for LOC100268168 Gene

Subcategory (RNA class) for LOC100268168 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC100268168 Gene

  • Uncharacterized LOC100268168 3
  • HSALNG0046660 169
  • NONHSAG042251 94
  • CTC-308K20.1 3
  • Lnc-DUSP1-4 170

External Ids for LOC100268168 Gene

Previous GeneCards Identifiers for LOC100268168 Gene

  • GC05U901103
  • GC05M172381

Summaries for LOC100268168 Gene

GeneCards Summary for LOC100268168 Gene

LOC100268168 (Uncharacterized LOC100268168) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100268168 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100268168 Gene

Genomics for LOC100268168 Gene

GeneHancer (GH) Regulatory Elements for LOC100268168 Gene

Promoters and enhancers for LOC100268168 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J172958 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -0.2 -244 3.1 ZNF785 SIN3A SP1 ZBTB40 CTCF SIX5 SMARCE1 POLR2A CREB1 HCFC1 ENSG00000204758 LOC100268168 RPL26L1 KLF3P1 ENSG00000253683 ENSG00000253628 ENSG00000253172 UBTD2 EFCAB9 SH3PXD2B
GH05J172950 Promoter/Enhancer 1.5 EPDnew FANTOM5 ENCODE dbSUPER 0.4 +5.4 5357 7.9 SIN3A ZNF24 ZBTB33 NCOA3 MAFK CREB1 POLR2A TARDBP CTBP1 CEBPB ENSG00000254295 RPL26L1 lnc-ERGIC1-3 DUSP1 ATP6V0E1 ERGIC1 ENSG00000204758 LOC100268168 NONHSAG042249.2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100268168 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100268168 gene promoter:
  • AML1a
  • Pax-2
  • Pax-3
  • SRF
  • SRF (504 AA)

Genomic Locations for LOC100268168 Gene

Genomic Locations for LOC100268168 Gene
chr5:172,954,782-172,959,368
(GRCh38/hg38)
Size:
4,587 bases
Orientation:
Minus strand
chr5:172,381,785-172,386,395
(GRCh37/hg19)
Size:
4,611 bases
Orientation:
Minus strand

Genomic View for LOC100268168 Gene

Genes around LOC100268168 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100268168 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100268168 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100268168 Gene

Proteins for LOC100268168 Gene

Post-translational modifications for LOC100268168 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100268168 Gene

Domains & Families for LOC100268168 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100268168 Gene

Function for LOC100268168 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100268168 Gene

Localization for LOC100268168 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100268168 Gene

Pathways & Interactions for LOC100268168 Gene

PathCards logo

SuperPathways for LOC100268168 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100268168 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100268168 Gene

Drugs & Compounds for LOC100268168 Gene

No Compound Related Data Available

Transcripts for LOC100268168 Gene

mRNA/cDNA for LOC100268168 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100268168 Gene

No ASD Table

Relevant External Links for LOC100268168 Gene

GeneLoc Exon Structure for
LOC100268168

Expression for LOC100268168 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100268168 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100268168 Gene

This gene is overexpressed in Testis (x4.7).

SOURCE GeneReport for Unigene cluster for LOC100268168 Gene:

Hs.519766
genes like me logo Genes that share expression patterns with LOC100268168: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100268168 Gene

Orthologs for LOC100268168 Gene

No data available for Orthologs and Evolution for LOC100268168 Gene

Paralogs for LOC100268168 Gene

No data available for Paralogs for LOC100268168 Gene

Variants for LOC100268168 Gene

Sequence variations from dbSNP and Humsavar for LOC100268168 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000107937 -- 172,956,193(-) C/T intron_variant
rs1000285579 -- 172,961,083(-) G/A upstream_transcript_variant
rs1000986372 -- 172,958,852(-) T/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1001248464 -- 172,955,997(-) T/A intron_variant, non_coding_transcript_variant
rs1001341317 -- 172,956,941(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100268168 Gene

Variant ID Type Subtype PubMed ID
nsv830555 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100268168 Gene

Disorders for LOC100268168 Gene

No disorders were found for LOC100268168 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100268168 Gene

Publications for LOC100268168 Gene

No publications were found for LOC100268168 Gene.

No data available for External Links for LOC100268168 Gene

Products for LOC100268168 Gene

Sources for LOC100268168 Gene