Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100268168 Gene

Subcategory (RNA class) for LOC100268168 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100268168 Gene

  • Uncharacterized LOC100268168 3
  • CTC-308K20.1 3
  • AC008429.1 5

External Ids for LOC100268168 Gene

Previous GeneCards Identifiers for LOC100268168 Gene

  • GC05U901103
  • GC05M172381

Summaries for LOC100268168 Gene

GeneCards Summary for LOC100268168 Gene

LOC100268168 (Uncharacterized LOC100268168) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100268168 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100268168 Gene

Genomics for LOC100268168 Gene

GeneHancer (GH) Regulatory Elements for LOC100268168 Gene

Promoters and enhancers for LOC100268168 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I172958 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -0.2 -220 3.1 HDGF SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B LOC100268168 RPL26L1 CREBRF BOD1 BNIP1 LOC285591
GH05I172763 Promoter/Enhancer 3.1 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.8 +187.2 187193 16.8 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 DUSP1 CREBRF BOD1 ERGIC1 SH3PXD2B LOC100268168 LOC100130394 LOC401218 UBTD2 LOC105377730
GH05I173322 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 11.8 -368.2 -368212 9.6 CLOCK MLX FEZF1 DMAP1 IRF4 SLC30A9 ZNF213 ZNF143 ZNF263 SP3 STC2 SH3PXD2B BOD1 LOC100268168 RNU6-500P LOC285593 BNIP1 CREBRF GC05M173296 GC05P173099
GH05I172894 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +58.4 58444 12.7 CLOCK MLX FEZF1 IRF4 YY1 E2F8 ZNF416 MEF2D SSRP1 GLIS1 BOD1 BNIP1 UBTD2 ERGIC1 DUSP1 FBXW11 ENSG00000253445 LOC401218 LOC105377730 SH3PXD2B
GH05I172280 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 9.9 +676.3 676312 5 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 UBTD2 EFCAB9 ENSG00000212529 LOC100130394 LOC100268168 KLF3P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100268168 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100268168 gene promoter:

Genomic Locations for LOC100268168 Gene

Genomic Locations for LOC100268168 Gene
chr5:172,954,782-172,959,392
(GRCh38/hg38)
Size:
4,611 bases
Orientation:
Minus strand
chr5:172,381,785-172,386,395
(GRCh37/hg19)

Genomic View for LOC100268168 Gene

Genes around LOC100268168 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100268168 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100268168 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100268168 Gene

Proteins for LOC100268168 Gene

Post-translational modifications for LOC100268168 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100268168 Gene

Domains & Families for LOC100268168 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100268168 Gene

Function for LOC100268168 Gene

Phenotypes From GWAS Catalog for LOC100268168 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100268168 Gene

Localization for LOC100268168 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100268168 Gene

Pathways & Interactions for LOC100268168 Gene

SuperPathways for LOC100268168 Gene

No Data Available

Interacting Proteins for LOC100268168 Gene

Gene Ontology (GO) - Biological Process for LOC100268168 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100268168 Gene

Drugs & Compounds for LOC100268168 Gene

No Compound Related Data Available

Transcripts for LOC100268168 Gene

mRNA/cDNA for LOC100268168 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100268168 Gene

Uncharacterized LOC100268168:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100268168 Gene

No ASD Table

Relevant External Links for LOC100268168 Gene

GeneLoc Exon Structure for
LOC100268168

Expression for LOC100268168 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100268168 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100268168 Gene

This gene is overexpressed in Testis (x4.7).

SOURCE GeneReport for Unigene cluster for LOC100268168 Gene:

Hs.519766
genes like me logo Genes that share expression patterns with LOC100268168: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100268168 Gene

Orthologs for LOC100268168 Gene

Evolution for LOC100268168 Gene

ENSEMBL:
Gene Tree for LOC100268168 (if available)
TreeFam:
Gene Tree for LOC100268168 (if available)

No data available for Orthologs for LOC100268168 Gene

Paralogs for LOC100268168 Gene

No data available for Paralogs for LOC100268168 Gene

Variants for LOC100268168 Gene

Sequence variations from dbSNP and Humsavar for LOC100268168 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000107937 -- 172,956,193(-) C/T intron_variant
rs1000285579 -- 172,961,083(-) G/A upstream_transcript_variant
rs1000986372 -- 172,958,852(-) T/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1001248464 -- 172,955,997(-) T/A intron_variant, non_coding_transcript_variant
rs1001341317 -- 172,956,941(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100268168 Gene

Variant ID Type Subtype PubMed ID
nsv830555 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100268168 Gene

Disorders for LOC100268168 Gene

Additional Disease Information for LOC100268168

No disorders were found for LOC100268168 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100268168 Gene

Publications for LOC100268168 Gene

No publications were found for LOC100268168 Gene.

Products for LOC100268168 Gene

Sources for LOC100268168 Gene

Content
Loading form....