Aliases for LOC100240735 Gene

Subcategory (RNA class) for LOC100240735 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC100240735 Gene

  • Uncharacterized LOC100240735 3
  • NONHSAG011272.2 91
  • Lnc-SMUG1-9 165

External Ids for LOC100240735 Gene

Previous GeneCards Identifiers for LOC100240735 Gene

  • GC12U901093
  • GC12M054473
  • GC12M054079
  • GC12M054095
  • GC12M054103
  • GC12M054101
  • GC12M054122
  • GC12M054082

Summaries for LOC100240735 Gene

GeneCards Summary for LOC100240735 Gene

LOC100240735 (Uncharacterized LOC100240735) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100240735 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100240735 Gene

Genomics for LOC100240735 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100240735 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J054079 Promoter/Enhancer 1.2 Ensembl ENCODE 600.7 +0.5 536 4.6 PRDM10 ZNF629 LEF1 ZNF692 PRDM1 ZIC2 ZSCAN4 PKNOX1 PATZ1 IKZF2 5EW4_A-012 ENSG00000249388 ENSG00000250654 LOC100240735 lnc-SMUG1-9 SMUG1 FLJ12825 CBX5 MIR615 HOXC4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100240735 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100240735 gene promoter:
  • AREB6
  • Egr-3
  • GATA-1
  • MAZR
  • POU2F1
  • POU2F1a
  • POU2F1b
  • POU2F1c
  • PPAR-alpha
  • RSRFC4

Genomic Locations for LOC100240735 Gene

Genomic Locations for LOC100240735 Gene
chr12:54,078,839-54,081,823
(GRCh38/hg38)
Size:
2,985 bases
Orientation:
Minus strand
chr12:54,470,622-54,475,687
(GRCh37/hg19)
Size:
5,066 bases
Orientation:
Minus strand

Genomic View for LOC100240735 Gene

Genes around LOC100240735 on UCSC Golden Path with GeneCards custom track
LOC100240735 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100240735 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100240735 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100240735 Gene

Proteins for LOC100240735 Gene

Post-translational modifications for LOC100240735 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100240735 Gene

Domains & Families for LOC100240735 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100240735 Gene

Function for LOC100240735 Gene

Phenotypes From GWAS Catalog for LOC100240735 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100240735 Gene

Localization for LOC100240735 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100240735 Gene

Pathways & Interactions for LOC100240735 Gene

PathCards logo

SuperPathways for LOC100240735 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100240735 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100240735 Gene

Drugs & Compounds for LOC100240735 Gene

No Compound Related Data Available

Transcripts for LOC100240735 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100240735 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D759_9606 lncRNA 905 1

RefSeq: NR_026658,

URS00008C05E2_9606 lncRNA 905 2

LNCipedia: lnc-SMUG1-9:2,

NONCODE: NONHSAT028569.2,

URS00008BD0E8_9606 lncRNA 796 2

LNCipedia: lnc-SMUG1-9:3,

NONCODE: NONHSAT028570.2,

LOC100240735 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100240735 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100240735 Gene

No ASD Table

Relevant External Links for LOC100240735 Gene

GeneLoc Exon Structure for
LOC100240735

Expression for LOC100240735 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100240735 Gene

mRNA expression in normal human tissues for LOC100240735 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100240735 Gene

This gene is overexpressed in Stomach (x5.8), Esophagus - Gastroesophageal Junction (x4.5), and Esophagus - Muscularis (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100240735

SOURCE GeneReport for Unigene cluster for LOC100240735 Gene:

Hs.635297
genes like me logo Genes that share expression patterns with LOC100240735: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100240735 Gene

Orthologs for LOC100240735 Gene

No data available for Orthologs and Evolution for LOC100240735 Gene

Paralogs for LOC100240735 Gene

No data available for Paralogs for LOC100240735 Gene

Variants for LOC100240735 Gene

Additional dbSNP identifiers (rs#s) for LOC100240735 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100240735 Gene

Variant ID Type Subtype PubMed ID
esv1009650 CNV gain 20482838
esv26073 CNV gain 19812545
esv2759900 CNV gain+loss 17122850
nsv428282 CNV gain 18775914
nsv832418 CNV loss 17160897
nsv832419 CNV loss 17160897
nsv973072 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100240735 Gene

Disorders for LOC100240735 Gene

No disorders were found for LOC100240735 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100240735 Gene

Publications for LOC100240735 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

No data available for Mastermind for LOC100240735 Gene

Products for LOC100240735 Gene

Sources for LOC100240735 Gene