Aliases for LOC100240734 Gene

Subcategory (RNA class) for LOC100240734 Gene

lncRNA

Aliases for LOC100240734 Gene

  • Uncharacterized LOC100240734 3

External Ids for LOC100240734 Gene

Previous GeneCards Identifiers for LOC100240734 Gene

  • GC12U901074
  • GC12P054495
  • GC12P054507
  • GC12P054082
  • GC12P054114
  • GC12P054140
  • GC12P054174

Summaries for LOC100240734 Gene

GeneCards Summary for LOC100240734 Gene

LOC100240734 (Uncharacterized LOC100240734) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100240734 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100240734 Gene

Genomics for LOC100240734 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100240734 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J054116 Enhancer 0.6 Ensembl 0.4 +14.1 14092 0.6 PRDM1 ZNF341 ZBTB20 ZBTB17 WT1 ZFHX2 PRDM4 ZNF366 BHLHE40 EGR2 FLJ12825 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 FAM242C LOC100240734 HOXC4 HOXC5
GH12J054112 Enhancer 0.3 Ensembl 0.4 +10.5 10492 0.2 ZFP91 ZNF223 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 FAM242C LOC100240734 FLJ12825 HOXC4 HOXC5
GH12J054124 Enhancer 0.3 Ensembl 0.4 +22.0 21992 0.4 EZH2 FAM242C LINC02381 FLJ12825 LOC100240734 SMUG1 HOXC4 HOXC5
GH12J054126 Enhancer 0.3 Ensembl 0.4 +22.5 22492 0.2 EZH2 FAM242C LINC02381 LOC100240734 SMUG1 HOXC4 HOXC5
GH12J054123 Enhancer 0.2 Ensembl 0.4 +21.0 20992 0.4 FAM242C LOC100240734 SMUG1 HOXC4 HOXC5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100240734 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100240734 gene promoter:
  • aMEF-2
  • AREB6
  • Egr-3
  • GATA-1
  • Gfi-1
  • MAZR
  • POU2F1
  • POU2F1a
  • TBP
  • TFIID

Genomic Locations for LOC100240734 Gene

Genomic Locations for LOC100240734 Gene
chr12:54,102,209-54,102,699
(GRCh38/hg38)
Size:
491 bases
Orientation:
Plus strand
chr12:54,475,902-54,496,483
(GRCh37/hg19)
Size:
20,582 bases
Orientation:
Plus strand

Genomic View for LOC100240734 Gene

Genes around LOC100240734 on UCSC Golden Path with GeneCards custom track
LOC100240734 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100240734 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100240734 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100240734 Gene

Proteins for LOC100240734 Gene

Post-translational modifications for LOC100240734 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100240734 Gene

Domains & Families for LOC100240734 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100240734 Gene

Function for LOC100240734 Gene

Phenotypes From GWAS Catalog for LOC100240734 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100240734 Gene

Localization for LOC100240734 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100240734 Gene

Pathways & Interactions for LOC100240734 Gene

PathCards logo

SuperPathways for LOC100240734 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100240734 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100240734 Gene

Drugs & Compounds for LOC100240734 Gene

No Compound Related Data Available

Transcripts for LOC100240734 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100240734 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A264_9606 lncRNA 491 1

RefSeq: NR_026657,

LOC100240734 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100240734 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100240734 Gene

No ASD Table

Relevant External Links for LOC100240734 Gene

GeneLoc Exon Structure for
LOC100240734

Expression for LOC100240734 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100240734 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100240734 Gene

This gene is overexpressed in Stomach (x9.4), Testis (x6.6), Esophagus - Gastroesophageal Junction (x4.6), Esophagus - Muscularis (x4.5), and Kidney - Cortex (x4.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100240734

SOURCE GeneReport for Unigene cluster for LOC100240734 Gene:

Hs.634954
genes like me logo Genes that share expression patterns with LOC100240734: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100240734 Gene

Orthologs for LOC100240734 Gene

No data available for Orthologs and Evolution for LOC100240734 Gene

Paralogs for LOC100240734 Gene

No data available for Paralogs for LOC100240734 Gene

Variants for LOC100240734 Gene

Additional dbSNP identifiers (rs#s) for LOC100240734 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100240734 Gene

Variant ID Type Subtype PubMed ID
esv1009650 CNV gain 20482838
esv26073 CNV gain 19812545
esv2759900 CNV gain+loss 17122850
nsv1150711 CNV duplication 26484159
nsv428282 CNV gain 18775914
nsv558999 CNV gain 21841781
nsv832418 CNV loss 17160897
nsv832419 CNV loss 17160897
nsv973072 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100240734 Gene

Disorders for LOC100240734 Gene

No disorders were found for LOC100240734 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100240734 Gene

Publications for LOC100240734 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

No data available for Mastermind for LOC100240734 Gene

Products for LOC100240734 Gene

Sources for LOC100240734 Gene