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Aliases for LOC100192426 Gene

Subcategory (RNA class) for LOC100192426 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100192426 Gene

  • Uncharacterized LOC100192426 3
  • AP001094.3 5

External Ids for LOC100192426 Gene

Summaries for LOC100192426 Gene

GeneCards Summary for LOC100192426 Gene

LOC100192426 (Uncharacterized LOC100192426) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100192426 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100192426 Gene

Genomics for LOC100192426 Gene

GeneHancer (GH) Regulatory Elements for LOC100192426 Gene

Promoters and enhancers for LOC100192426 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I008367 Promoter/Enhancer 1.2 Ensembl ENCODE 550.8 -0.6 -554 0.9 CTCF RB1 ETV1 MAX ZIC2 RAD21 ZNF335 GLIS2 CTBP1 ZNF366 LOC100192426 ENSG00000265413 PTPRM
GH18I008366 Enhancer 0.2 ENCODE 550.8 +0.1 76 0.2 LOC100192426 GC18M007966 PTPRM
GH18I008340 Enhancer 1.1 Ensembl ENCODE 0.3 +25.1 25116 2 FOXA2 ARID4B SIN3A DMAP1 DNMT3B THRB RAD21 RARA YY1 HSF1 LOC100192426 GC18M007966 PTPRM
GH18I008389 Enhancer 0.6 ENCODE 0.3 -22.8 -22784 0.2 CTCF ZNF654 RB1 TEAD1 REST RAD21 SMC3 ZNF143 TCF7L2 ENSG00000265413 LOC100192426 PTPRM
GH18I008329 Enhancer 0.5 ENCODE 0.3 +37.6 37646 0.2 JUN NR2F1 CREB1 ATF7 FOSL2 FOS RARA LOC100192426 GC18M007966 PTPRM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100192426 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100192426 gene promoter:

Genomic Locations for LOC100192426 Gene

Genomic Locations for LOC100192426 Gene
chr18:8,360,820-8,367,034
(GRCh38/hg38)
Size:
6,215 bases
Orientation:
Minus strand
chr18:8,360,818-8,367,032
(GRCh37/hg19)

Genomic View for LOC100192426 Gene

Genes around LOC100192426 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100192426 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100192426 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100192426 Gene

Proteins for LOC100192426 Gene

Post-translational modifications for LOC100192426 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100192426 Gene

Domains & Families for LOC100192426 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100192426 Gene

Function for LOC100192426 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100192426 Gene

Localization for LOC100192426 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100192426 Gene

Pathways & Interactions for LOC100192426 Gene

SuperPathways for LOC100192426 Gene

No Data Available

Interacting Proteins for LOC100192426 Gene

Gene Ontology (GO) - Biological Process for LOC100192426 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100192426 Gene

Drugs & Compounds for LOC100192426 Gene

No Compound Related Data Available

Transcripts for LOC100192426 Gene

mRNA/cDNA for LOC100192426 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100192426 Gene

Uncharacterized LOC100192426:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100192426 Gene

No ASD Table

Relevant External Links for LOC100192426 Gene

GeneLoc Exon Structure for
LOC100192426

Expression for LOC100192426 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100192426 Gene

SOURCE GeneReport for Unigene cluster for LOC100192426 Gene:

Hs.666655
genes like me logo Genes that share expression patterns with LOC100192426: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100192426 Gene

Orthologs for LOC100192426 Gene

Evolution for LOC100192426 Gene

ENSEMBL:
Gene Tree for LOC100192426 (if available)
TreeFam:
Gene Tree for LOC100192426 (if available)

No data available for Orthologs for LOC100192426 Gene

Paralogs for LOC100192426 Gene

No data available for Paralogs for LOC100192426 Gene

Variants for LOC100192426 Gene

Sequence variations from dbSNP and Humsavar for LOC100192426 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000487331 -- 8,363,647(-) G/C intron_variant
rs1000523503 -- 8,368,719(-) G/T upstream_transcript_variant
rs1000700782 -- 8,363,288(-) A/T intron_variant
rs1001042482 -- 8,363,404(-) T/C intron_variant
rs1001361075 -- 8,365,767(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100192426 Gene

Variant ID Type Subtype PubMed ID
nsv1058445 CNV loss 25217958
nsv526300 CNV loss 19592680
nsv576426 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100192426 Gene

Disorders for LOC100192426 Gene

Additional Disease Information for LOC100192426

No disorders were found for LOC100192426 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100192426 Gene

Publications for LOC100192426 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for LOC100192426 Gene

Sources for LOC100192426 Gene

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