Aliases for LOC100192426 Gene

Subcategory (RNA class) for LOC100192426 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LOC100192426 Gene

  • Uncharacterized LOC100192426 3
  • Novel Transcript, Antisense To PTPRM 5
  • Lnc-PPP4R1-11 170
  • HSALNG0119859 169
  • NONHSAG023302 94
  • AP001094.3 5

External Ids for LOC100192426 Gene

Summaries for LOC100192426 Gene

GeneCards Summary for LOC100192426 Gene

LOC100192426 (Uncharacterized LOC100192426) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100192426 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100192426 Gene

Genomics for LOC100192426 Gene

GeneHancer (GH) Regulatory Elements for LOC100192426 Gene

Promoters and enhancers for LOC100192426 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J008366 Promoter/Enhancer 1 Ensembl ENCODE 750.6 -0.3 -307 1.3 CTCF L3MBTL2 RAD21 SP7 GLIS2 ZIC2 ZBTB8A PATZ1 ZNF501 EZH2 LOC100192426 NONHSAG023303.2 PTPRM
GH18J008368 Enhancer 0.3 Ensembl 750.6 -1.6 -1582 0.6 GLIS1 LOC100192426 NONHSAG023303.2 PTPRM
GH18J008389 Enhancer 0.5 ENCODE 0.3 -22.7 -22699 0.2 CTCF TCF7L2 RAD21 REST TCF7 SMC3 ZNF143 RB1 NONHSAG023303.2 LOC100192426 PTPRM
GH18J008356 Enhancer 0.4 Ensembl 0.4 +9.3 9318 2.4 ZSCAN4 USF1 CTCF lnc-PPP4R1-20 LOC100192426 PTPRM
GH18J008374 Enhancer 0.3 Ensembl ENCODE 0.4 -6.4 -6382 0.6 LOC100192426 NONHSAG023303.2 PTPRM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100192426 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100192426 gene promoter:
  • Ik-3
  • Lmo2
  • Oct-B1
  • oct-B2
  • p53
  • POU2F1a
  • RFX1
  • SRF
  • SRF (504 AA)
  • TBP

Genomic Locations for LOC100192426 Gene

Genomic Locations for LOC100192426 Gene
chr18:8,360,747-8,367,119
(GRCh38/hg38)
Size:
6,373 bases
Orientation:
Minus strand
chr18:8,360,818-8,367,032
(GRCh37/hg19)
Size:
6,215 bases
Orientation:
Minus strand

Genomic View for LOC100192426 Gene

Genes around LOC100192426 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100192426 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100192426 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100192426 Gene

Proteins for LOC100192426 Gene

Post-translational modifications for LOC100192426 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100192426 Gene

Domains & Families for LOC100192426 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100192426 Gene

Function for LOC100192426 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100192426 Gene

Localization for LOC100192426 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100192426 Gene

Pathways & Interactions for LOC100192426 Gene

PathCards logo

SuperPathways for LOC100192426 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100192426 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100192426 Gene

Drugs & Compounds for LOC100192426 Gene

No Compound Related Data Available

Transcripts for LOC100192426 Gene

mRNA/cDNA for LOC100192426 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) NONCODE transcripts :
(1) LNCipedia transcripts :
(3) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100192426 Gene

No ASD Table

Relevant External Links for LOC100192426 Gene

GeneLoc Exon Structure for
LOC100192426

Expression for LOC100192426 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100192426 Gene

SOURCE GeneReport for Unigene cluster for LOC100192426 Gene:

Hs.666655
genes like me logo Genes that share expression patterns with LOC100192426: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100192426 Gene

Orthologs for LOC100192426 Gene

Evolution for LOC100192426 Gene

ENSEMBL:
Gene Tree for LOC100192426 (if available)
TreeFam:
Gene Tree for LOC100192426 (if available)

No data available for Orthologs for LOC100192426 Gene

Paralogs for LOC100192426 Gene

No data available for Paralogs for LOC100192426 Gene

Variants for LOC100192426 Gene

Sequence variations from dbSNP and Humsavar for LOC100192426 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000487331 -- 8,363,647(-) G/C intron_variant
rs1000523503 -- 8,368,719(-) G/T upstream_transcript_variant
rs1000700782 -- 8,363,288(-) A/T intron_variant
rs1001042482 -- 8,363,404(-) T/C intron_variant
rs1001361075 -- 8,365,767(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100192426 Gene

Variant ID Type Subtype PubMed ID
nsv1058445 CNV loss 25217958
nsv526300 CNV loss 19592680
nsv576426 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100192426 Gene

Disorders for LOC100192426 Gene

No disorders were found for LOC100192426 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100192426 Gene

Publications for LOC100192426 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 56

No data available for External Links for LOC100192426 Gene

Products for LOC100192426 Gene

Sources for LOC100192426 Gene