Aliases for LOC100190986 Gene

Subcategory (RNA class) for LOC100190986 Gene

ncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC100190986 Gene

  • Uncharacterized LOC100190986 3
  • NONHSAG018842.2 91
  • Lnc-CRYM-3 165

External Ids for LOC100190986 Gene

Previous GeneCards Identifiers for LOC100190986 Gene

  • GC16U900880
  • GC16M021443
  • GC16M021447
  • GC16M021533

Summaries for LOC100190986 Gene

GeneCards Summary for LOC100190986 Gene

LOC100190986 (Uncharacterized LOC100190986) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100190986 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100190986 Gene

Genomics for LOC100190986 Gene

GeneHancer (GH) Regulatory Elements Pubs


Top Transcription factor binding sites by QIAGEN in the LOC100190986 gene promoter:
  • aMEF-2
  • HNF-1
  • HNF-1A
  • MEF-2A
  • Nkx2-2
  • Nkx3-1
  • Nkx3-1 v1
  • Nkx3-1 v2
  • Nkx3-1 v3
  • Nkx3-1 v4

Genomic Locations for LOC100190986 Gene

Genomic Locations for LOC100190986 Gene
chr16:21,432,003-21,434,455
(GRCh38/hg38)
Size:
2,453 bases
Orientation:
Minus strand
chr16:21,443,324-21,445,776
(GRCh37/hg19)
Size:
2,453 bases
Orientation:
Minus strand

Genomic View for LOC100190986 Gene

Genes around LOC100190986 on UCSC Golden Path with GeneCards custom track
LOC100190986 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100190986 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100190986 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100190986 Gene

Proteins for LOC100190986 Gene

Post-translational modifications for LOC100190986 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100190986 Gene

Domains & Families for LOC100190986 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100190986 Gene

Function for LOC100190986 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100190986 Gene

Localization for LOC100190986 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100190986 Gene

Pathways & Interactions for LOC100190986 Gene

PathCards logo

SuperPathways for LOC100190986 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100190986 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100190986 Gene

Drugs & Compounds for LOC100190986 Gene

No Compound Related Data Available

Transcripts for LOC100190986 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100190986 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DACF_9606 lncRNA 2453 2

RefSeq: NR_024456,

LNCipedia: lnc-CRYM-3:2,

URS00008B7789_9606 lncRNA 2432 2

LNCipedia: lnc-CRYM-3:1,

NONCODE: NONHSAT140989.2,

LOC100190986 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100190986 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100190986 Gene

No ASD Table

Relevant External Links for LOC100190986 Gene

GeneLoc Exon Structure for
LOC100190986

Expression for LOC100190986 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100190986

SOURCE GeneReport for Unigene cluster for LOC100190986 Gene:

Hs.648439
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100190986 Gene

Orthologs for LOC100190986 Gene

No data available for Orthologs and Evolution for LOC100190986 Gene

Paralogs for LOC100190986 Gene

No data available for Paralogs for LOC100190986 Gene

Variants for LOC100190986 Gene

Additional dbSNP identifiers (rs#s) for LOC100190986 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100190986 Gene

Variant ID Type Subtype PubMed ID
dgv115n111 CNV duplication 26073780
dgv116e55 CNV loss 17911159
dgv1318n106 CNV duplication 24896259
dgv2800n100 CNV gain 25217958
dgv2801n100 CNV loss 25217958
dgv2813n100 CNV loss 25217958
dgv33n68 CNV loss 17160897
dgv3n1 OTHER inversion 15895083
dgv47n16 OTHER inversion 17901297
esv25717 CNV gain+loss 19812545
esv25819 CNV gain 19812545
esv2758636 CNV gain+loss 17122850
esv2758637 CNV gain+loss 17122850
esv32980 CNV loss 17666407
esv3368045 CNV duplication 20981092
esv3368991 OTHER inversion 20981092
esv34235 CNV gain 17911159
esv34544 CNV gain 17911159
esv3570431 CNV gain 25503493
esv998989 OTHER inversion 20482838
nsv1051649 CNV gain+loss 25217958
nsv1052004 CNV gain 25217958
nsv1076423 CNV duplication 25765185
nsv1077770 OTHER inversion 25765185
nsv1110272 CNV duplication 24896259
nsv1118571 CNV duplication 24896259
nsv1139646 CNV duplication 24896259
nsv1140248 OTHER inversion 24896259
nsv1141281 CNV duplication 24896259
nsv1146536 CNV duplication 26484159
nsv1148848 CNV duplication 26484159
nsv1150881 CNV duplication 26484159
nsv1160372 CNV duplication 26073780
nsv1160373 CNV duplication 26073780
nsv428322 CNV gain 18775914
nsv428324 CNV gain 18775914
nsv433437 CNV gain 18776910
nsv433438 CNV gain 18776910
nsv433439 CNV gain 18776910
nsv433440 CNV gain 18776910
nsv436835 CNV insertion 17901297
nsv469882 CNV loss 16826518
nsv471691 CNV gain+loss 15918152
nsv499139 OTHER inversion 21111241
nsv7280 OTHER inversion 18451855
nsv827584 CNV gain 20364138
nsv833167 CNV gain 17160897
nsv833168 CNV gain+loss 17160897
nsv833171 CNV gain+loss 17160897
nsv9405 CNV gain+loss 18304495
nsv977940 CNV duplication 23825009
nsv978037 CNV duplication 23825009
nsv978107 CNV duplication 23825009
nsv978111 CNV duplication 23825009
nsv978205 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100190986 Gene

Disorders for LOC100190986 Gene

No disorders were found for LOC100190986 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100190986 Gene

Publications for LOC100190986 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100190986 Gene

Products for LOC100190986 Gene

Sources for LOC100190986 Gene