Aliases for LOC100134391 Gene

Subcategory (RNA class) for LOC100134391 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC100134391 Gene

  • Uncharacterized LOC100134391 3
  • CTD-2532D12.4 3
  • Lnc-RPL38-3 165

External Ids for LOC100134391 Gene

Previous GeneCards Identifiers for LOC100134391 Gene

  • GC17U900935
  • GC17P071733

Summaries for LOC100134391 Gene

GeneCards Summary for LOC100134391 Gene

LOC100134391 (Uncharacterized LOC100134391) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100134391 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100134391 Gene

Genomics for LOC100134391 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100134391 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J073739 Enhancer 0.3 Ensembl 600.7 +1.2 1247 0.2 MEIS2 ENSG00000263574 LOC100134391 lnc-SDK2-7 SDK2 RPL38
GH17J073749 Enhancer 0.8 Ensembl 0.4 +11.8 11800 0.7 CREB1 ZNF629 ZNF174 ZNF747 ZNF311 ZNF148 MNT RBAK ZNF639 ZEB1 lnc-SDK2-7 C17orf80 CDC42EP4 COG1 SSTR2 FAM104A LINC00469 LOC100134391 ENSG00000263574 lnc-RPL38-5
GH17J073750 Enhancer 0.6 Ensembl 0.4 +13.4 13447 0.6 ZIC2 SP1 CEBPA RCOR1 RAD21 CEBPB HNF4A TFAP4 MAX CHD2 LINC00469 lnc-SDK2-7 LOC100134391 ENSG00000263574 lnc-RPL38-5 SDK2 RPL38
GH17J073743 Enhancer 0.5 FANTOM5 0.4 +5.7 5653 0.4 ZNF512 EZH2 ZNF366 EGR2 NFXL1 ENSG00000263574 LOC100134391 lnc-SDK2-7 SDK2 RPL38
GH17J073722 Enhancer 0.5 ENCODE 0.4 -15.1 -15087 1.5 TOE1 RAD51 RCOR1 EZH2 CHD2 GATA2 LOC107985091 SDK2 ENSG00000263574 LOC100134391 RPL38
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100134391 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC100134391

Top Transcription factor binding sites by QIAGEN in the LOC100134391 gene promoter:
  • AhR
  • AREB6
  • En-1
  • GATA-1
  • IRF-7A
  • NF-E2
  • NF-E2 p45
  • NF-kappaB
  • NF-kappaB1
  • Nkx2-5

Genomic Locations for LOC100134391 Gene

Genomic Locations for LOC100134391 Gene
chr17:73,737,854-73,756,557
(GRCh38/hg38)
Size:
18,704 bases
Orientation:
Plus strand
chr17:71,733,993-71,752,696
(GRCh37/hg19)
Size:
18,704 bases
Orientation:
Plus strand

Genomic View for LOC100134391 Gene

Genes around LOC100134391 on UCSC Golden Path with GeneCards custom track
LOC100134391 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100134391 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100134391 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100134391 Gene

Proteins for LOC100134391 Gene

Post-translational modifications for LOC100134391 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100134391 Gene

Domains & Families for LOC100134391 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100134391 Gene

Function for LOC100134391 Gene

Phenotypes From GWAS Catalog for LOC100134391 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100134391 Gene

Localization for LOC100134391 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100134391 Gene

Pathways & Interactions for LOC100134391 Gene

PathCards logo

SuperPathways for LOC100134391 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100134391 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100134391 Gene

Drugs & Compounds for LOC100134391 Gene

No Compound Related Data Available

Transcripts for LOC100134391 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100134391 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005C0D16_9606 lncRNA 1140 3

RefSeq: NR_164140,

Ensembl: ENST00000583854 (view in UCSC) ,

LNCipedia: lnc-RPL38-3:1,

LOC100134391 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100134391 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100134391 Gene

No ASD Table

Relevant External Links for LOC100134391 Gene

GeneLoc Exon Structure for
LOC100134391

Expression for LOC100134391 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100134391 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100134391 Gene

This gene is overexpressed in Spleen (x19.6), Lung (x11.3), Whole Blood (x8.5), and Pancreas (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100134391

SOURCE GeneReport for Unigene cluster for LOC100134391 Gene:

Hs.694655
genes like me logo Genes that share expression patterns with LOC100134391: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100134391 Gene

Orthologs for LOC100134391 Gene

No data available for Orthologs and Evolution for LOC100134391 Gene

Paralogs for LOC100134391 Gene

No data available for Paralogs for LOC100134391 Gene

Variants for LOC100134391 Gene

Additional dbSNP identifiers (rs#s) for LOC100134391 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100134391 Gene

Variant ID Type Subtype PubMed ID
dgv12e196 CNV duplication 17116639
dgv3281n100 CNV loss 25217958
dgv566e199 CNV deletion 23128226
esv2274431 CNV deletion 18987734
esv2422139 CNV deletion 20811451
esv2716208 CNV deletion 23290073
esv2758703 CNV loss 17122850
esv2760453 CNV loss 21179565
esv2761976 CNV loss 21179565
esv28640 CNV loss 19812545
esv3582906 CNV loss 25503493
esv3641225 CNV loss 21293372
esv3641226 CNV gain 21293372
nsv1066417 CNV loss 25217958
nsv1066622 CNV loss 25217958
nsv1067421 CNV loss 25217958
nsv442425 CNV loss 18776908
nsv528478 CNV loss 19592680
nsv575988 CNV loss 21841781
nsv819477 CNV loss 19587683
nsv952364 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100134391 Gene

Disorders for LOC100134391 Gene

No disorders were found for LOC100134391 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100134391 Gene

Publications for LOC100134391 Gene

No publications were found for LOC100134391 Gene.

No data available for Mastermind for LOC100134391 Gene

Products for LOC100134391 Gene

Sources for LOC100134391 Gene