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Aliases for LOC100134368 Gene

Subcategory (RNA class) for LOC100134368 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100134368 Gene

  • Uncharacterized LOC100134368 3
  • Z97634.1 5

External Ids for LOC100134368 Gene

Previous GeneCards Identifiers for LOC100134368 Gene

  • GC16U900804
  • GC16P000433
  • GC16P000351
  • GC16P000434
  • GC16P000435
  • GC16P000440
  • GC16P000443
  • GC16P000445
  • GC16P000449
  • GC16P000452
  • GC16P000385
  • GC16P000397
  • GC16P000422

Summaries for LOC100134368 Gene

GeneCards Summary for LOC100134368 Gene

LOC100134368 (Uncharacterized LOC100134368) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100134368 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100134368 Gene

Genomics for LOC100134368 Gene

GeneHancer (GH) Regulatory Elements for LOC100134368 Gene

Promoters and enhancers for LOC100134368 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I000378 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 -0.4 -358 6.1 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 ETS1 SLC30A9 GLIS2 FOS TMEM8A LOC100134368 MRPL28 ENSG00000228779 LOC105371036
GH16I001308 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 19.2 +928.7 928657 5.2 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 UBE2I LOC102723815 WDR90 CRAMP1 TELO2 ENSG00000261505 E4F1 TSC2 ENSG00000260051 IFT140
GH16I000981 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 11.1 +599.3 599304 1.6 ZNF493 ZNF133 SIN3A GLI4 ZNF2 GLIS2 ZNF213 ZNF416 KLF7 ZNF548 ENSG00000260807 LMF1 SOX8 GC16M000980 GC16M000982 GC16P001002 WDR90 CRAMP1 ENSG00000261505 UBE2I
GH16I000396 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 5.6 +17.8 17786 7.7 HDGF ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 NME4 DECR2 WDR90 ENSG00000261505 RHOT2 WASH4P JMJD8 CAPN15 UBE2I AXIN1
GH16I000386 Enhancer 1.3 Ensembl ENCODE dbSUPER 8.3 +5.9 5866 3.6 HDAC1 PKNOX1 ATF1 ZBTB40 TCF12 EGR1 ATF7 KDM4B ZNF362 PHF21A TMEM8A RPL23AP5 GC16P000483 LOC105371036 AXIN1 WASH4P ENSG00000261505 RHOT2 NHLRC4 PIGQ
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100134368 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100134368 gene promoter:

Genomic Locations for LOC100134368 Gene

Genomic Locations for LOC100134368 Gene
chr16:382,097-392,960
(GRCh38/hg38)
Size:
10,864 bases
Orientation:
Plus strand
chr16:432,097-442,960
(GRCh37/hg19)

Genomic View for LOC100134368 Gene

Genes around LOC100134368 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100134368 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100134368 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100134368 Gene

Proteins for LOC100134368 Gene

Post-translational modifications for LOC100134368 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100134368 Gene

Domains & Families for LOC100134368 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100134368 Gene

Function for LOC100134368 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100134368 Gene

Localization for LOC100134368 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100134368 Gene

Pathways & Interactions for LOC100134368 Gene

SuperPathways for LOC100134368 Gene

No Data Available

Interacting Proteins for LOC100134368 Gene

Gene Ontology (GO) - Biological Process for LOC100134368 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100134368 Gene

Drugs & Compounds for LOC100134368 Gene

No Compound Related Data Available

Transcripts for LOC100134368 Gene

mRNA/cDNA for LOC100134368 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100134368 Gene

Uncharacterized LOC100134368:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100134368 Gene

No ASD Table

Relevant External Links for LOC100134368 Gene

GeneLoc Exon Structure for
LOC100134368

Expression for LOC100134368 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100134368 Gene

SOURCE GeneReport for Unigene cluster for LOC100134368 Gene:

Hs.621241
genes like me logo Genes that share expression patterns with LOC100134368: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100134368 Gene

Orthologs for LOC100134368 Gene

Evolution for LOC100134368 Gene

ENSEMBL:
Gene Tree for LOC100134368 (if available)
TreeFam:
Gene Tree for LOC100134368 (if available)

No data available for Orthologs for LOC100134368 Gene

Paralogs for LOC100134368 Gene

No data available for Paralogs for LOC100134368 Gene

Variants for LOC100134368 Gene

Sequence variations from dbSNP and Humsavar for LOC100134368 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000029973 -- 380,988(+) G/T upstream_transcript_variant
rs1000226676 -- 385,944(+) C/A intron_variant
rs1000242285 -- 380,240(+) G/A
rs1000334383 -- 390,223(+) A/G intron_variant
rs1000353591 -- 390,877(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100134368 Gene

Variant ID Type Subtype PubMed ID
dgv32n68 CNV loss 17160897
dgv4809n54 CNV loss 21841781
dgv4810n54 CNV loss 21841781
esv2422427 CNV duplication 17116639
esv33562 CNV loss 17666407
esv3637563 CNV gain 21293372
nsv457303 CNV loss 19166990
nsv517471 CNV loss 19592680
nsv570954 CNV loss 21841781
nsv570956 CNV gain 21841781
nsv827478 CNV gain 20364138
nsv952897 CNV deletion 24416366
nsv977100 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100134368 Gene

Disorders for LOC100134368 Gene

Additional Disease Information for LOC100134368

No disorders were found for LOC100134368 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100134368 Gene

Publications for LOC100134368 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC100134368 Gene

Sources for LOC100134368 Gene

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