Aliases for LOC100133091 Gene

Subcategory (RNA class) for LOC100133091 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC100133091 Gene

  • Uncharacterized LOC100133091 3
  • HSALNG0059081 169
  • NONHSAG048029 94
  • Lnc-UPK3B-5 170

External Ids for LOC100133091 Gene

Previous GeneCards Identifiers for LOC100133091 Gene

  • GC07P076017
  • GC07P076180

Summaries for LOC100133091 Gene

GeneCards Summary for LOC100133091 Gene

LOC100133091 (Uncharacterized LOC100133091) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100133091 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100133091 Gene

Genomics for LOC100133091 Gene

GeneHancer (GH) Regulatory Elements for LOC100133091 Gene

Promoters and enhancers for LOC100133091 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100133091 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100133091 gene promoter:
  • AML1a
  • E2F
  • E2F-1
  • Evi-1
  • Max1
  • Nkx2-2
  • POU6F1 (c2)
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c

Genomic Locations for LOC100133091 Gene

Genomic Locations for LOC100133091 Gene
chr7:76,549,311-76,627,982
(GRCh38/hg38)
Size:
78,672 bases
Orientation:
Plus strand
chr7:76,178,658-76,257,299
(GRCh37/hg19)
Size:
78,642 bases
Orientation:
Plus strand

Genomic View for LOC100133091 Gene

Genes around LOC100133091 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100133091 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100133091 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100133091 Gene

Proteins for LOC100133091 Gene

Post-translational modifications for LOC100133091 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100133091 Gene

Domains & Families for LOC100133091 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100133091 Gene

Function for LOC100133091 Gene

Phenotypes From GWAS Catalog for LOC100133091 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100133091 Gene

Localization for LOC100133091 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100133091 Gene

Pathways & Interactions for LOC100133091 Gene

PathCards logo

SuperPathways for LOC100133091 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100133091 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100133091 Gene

Drugs & Compounds for LOC100133091 Gene

No Compound Related Data Available

Transcripts for LOC100133091 Gene

mRNA/cDNA for LOC100133091 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100133091 Gene

No ASD Table

Relevant External Links for LOC100133091 Gene

GeneLoc Exon Structure for
LOC100133091

Expression for LOC100133091 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100133091 Gene

SOURCE GeneReport for Unigene cluster for LOC100133091 Gene:

Hs.712837
genes like me logo Genes that share expression patterns with LOC100133091: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100133091 Gene

Orthologs for LOC100133091 Gene

No data available for Orthologs and Evolution for LOC100133091 Gene

Paralogs for LOC100133091 Gene

No data available for Paralogs for LOC100133091 Gene

Variants for LOC100133091 Gene

Sequence variations from dbSNP and Humsavar for LOC100133091 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000006268 -- 76,580,218(+) A/G intron_variant
rs1000015805 -- 76,602,074(+) C/G intron_variant
rs1000098296 -- 76,562,104(+) T/A/C intron_variant
rs1000143979 -- 76,561,803(+) C/T intron_variant
rs1000170647 -- 76,623,101(+) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100133091 Gene

Variant ID Type Subtype PubMed ID
dgv11464n54 CNV gain 21841781
dgv11465n54 CNV loss 21841781
dgv120n16 CNV deletion 17901297
dgv1218e199 CNV deletion 23128226
dgv121n16 CNV insertion 17901297
dgv22n31 CNV gain 19718026
dgv232e55 CNV gain 17911159
dgv233e55 CNV loss 17911159
dgv234e55 CNV gain 17911159
dgv235e55 CNV loss 17911159
dgv63n64 CNV loss 17921354
dgv6470n100 CNV loss 25217958
dgv6471n100 CNV gain 25217958
dgv6472n100 CNV loss 25217958
dgv6473n100 CNV gain 25217958
dgv6474n100 CNV loss 25217958
dgv6475n100 CNV gain 25217958
dgv6476n100 CNV gain 25217958
dgv6477n100 CNV loss 25217958
dgv6478n100 CNV gain 25217958
dgv6479n100 CNV gain+loss 25217958
dgv6480n100 CNV gain 25217958
dgv6481n100 CNV gain 25217958
dgv6482n100 CNV loss 25217958
dgv6483n100 CNV loss 25217958
dgv6484n100 CNV gain 25217958
dgv64n64 CNV gain 17921354
dgv822n27 CNV loss 19166990
dgv823n27 CNV gain 19166990
esv23975 CNV gain+loss 19812545
esv2421739 OTHER complex 20811451
esv2422423 CNV duplication 17116639
esv2422494 CNV duplication 17116639
esv2577198 CNV loss 19546169
esv2734687 CNV deletion 23290073
esv2761124 CNV gain 21179565
esv2764008 CNV gain+loss 21179565
esv3541930 CNV deletion 23714750
esv3584547 CNV gain 24956385
esv3613766 CNV loss 21293372
esv3613769 CNV loss 21293372
esv3613770 CNV gain 21293372
esv3891147 CNV gain+loss 25118596
nsv1034692 CNV gain+loss 25217958
nsv1074523 CNV deletion 25765185
nsv1144185 CNV deletion 24896259
nsv1161565 CNV duplication 26073780
nsv297 CNV deletion 15895083
nsv428174 CNV gain 18775914
nsv470321 CNV gain 18288195
nsv471447 CNV gain 19718026
nsv510964 OTHER complex 20534489
nsv517634 CNV gain+loss 19592680
nsv528969 CNV gain 19592680
nsv5797 CNV deletion 18451855
nsv607585 CNV gain 21841781
nsv607593 CNV gain 21841781
nsv607624 CNV gain 21841781
nsv607627 CNV loss 21841781
nsv7403 OTHER inversion 18451855
nsv8161 CNV loss 18304495
nsv824175 CNV gain 20364138
nsv824177 CNV gain 20364138
nsv951361 CNV deletion 24416366
nsv970895 CNV duplication 23825009
nsv981538 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100133091 Gene

Disorders for LOC100133091 Gene

No disorders were found for LOC100133091 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100133091 Gene

Publications for LOC100133091 Gene

  1. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. (PMID: 28611215) Fei T … Brown M (Proceedings of the National Academy of Sciences of the United States of America 2017) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC100133091 Gene

Products for LOC100133091 Gene

Sources for LOC100133091 Gene