Aliases for LOC100133077 Gene

Subcategory (RNA class) for LOC100133077 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LOC100133077 Gene

  • Uncharacterized LOC100133077 3
  • Novel Transcript, Antisense To CACNA1B And EHMT1 5
  • Lnc-ZMYND19-3 170
  • HSALNG0075457 169
  • NONHSAG053882 94
  • AL772363.1 5

External Ids for LOC100133077 Gene

Previous GeneCards Identifiers for LOC100133077 Gene

  • GC09M139883
  • GC09U901346
  • GC09M140763

Summaries for LOC100133077 Gene

GeneCards Summary for LOC100133077 Gene

LOC100133077 (Uncharacterized LOC100133077) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100133077 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100133077 Gene

Genomics for LOC100133077 Gene

GeneHancer (GH) Regulatory Elements for LOC100133077 Gene

Promoters and enhancers for LOC100133077 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J137890 Enhancer 0.6 ENCODE 750.6 +1.6 1646 0.2 ZNF148 KLF14 REST EHMT2 ZFHX2 SIN3A MAZ ZNF143 EZH2 ZNF580 LOC100133077 CACNA1B
GH09J137233 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.8 +653.4 653360 11.7 ZNF785 SIN3A ZNF24 ZBTB40 SP1 CTCF SREBF1 ZBTB6 MLX RBPJ TUBB4B EHMT1 ENTR1 ANAPC2 DPH7 INPP5E SNHG7 NDOR1 ENSG00000255585 SEC16A
GH09J137221 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.8 +665.7 665718 11.7 SP1 ZBTB40 CTCF SREBF1 ZBTB6 RBPJ POLR2A NR2F1 NR2F6 HCFC1 RNF224 lnc-RNF208-1 RNF208 EHMT1 GRIN1 ENSG00000255585 ENTR1 CACNA1B LOC100133077 ANAPC2
GH09J137149 Enhancer 0.8 ENCODE 12.8 +741.6 741647 1.8 E2F8 SP1 ZNF362 RELA MLLT1 PRDM1 KLF14 IKZF1 PRDM10 SMARCC1 L13712-034 GRIN1 CACNA1B RNF208 TMEM210 ANAPC2 LOC100133077 TPRN DPP7 MAN1B1
GH09J137876 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 6.3 +14.4 14369 1.6 CTCF GLIS2 REST POLR2A PATZ1 ZNF524 NRF1 ZBTB20 EZH2 EHMT2 CACNA1B LOC100133077 TUBBP5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100133077 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100133077 Gene

Genomic Locations for LOC100133077 Gene
chr9:137,867,913-137,892,570
(GRCh38/hg38)
Size:
24,658 bases
Orientation:
Minus strand
chr9:140,762,377-140,787,022
(GRCh37/hg19)
Size:
24,646 bases
Orientation:
Minus strand

Genomic View for LOC100133077 Gene

Genes around LOC100133077 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100133077 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100133077 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100133077 Gene

Proteins for LOC100133077 Gene

Post-translational modifications for LOC100133077 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100133077 Gene

Domains & Families for LOC100133077 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100133077 Gene

Function for LOC100133077 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100133077 Gene

Localization for LOC100133077 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100133077 Gene

Pathways & Interactions for LOC100133077 Gene

PathCards logo

SuperPathways for LOC100133077 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100133077 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100133077 Gene

Drugs & Compounds for LOC100133077 Gene

No Compound Related Data Available

Transcripts for LOC100133077 Gene

mRNA/cDNA for LOC100133077 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(1) LncBook transcripts :
(5) LNCipedia transcripts :
(3) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100133077 Gene

No ASD Table

Relevant External Links for LOC100133077 Gene

GeneLoc Exon Structure for
LOC100133077

Expression for LOC100133077 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100133077 Gene

SOURCE GeneReport for Unigene cluster for LOC100133077 Gene:

Hs.640081
genes like me logo Genes that share expression patterns with LOC100133077: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100133077 Gene

Orthologs for LOC100133077 Gene

Evolution for LOC100133077 Gene

ENSEMBL:
Gene Tree for LOC100133077 (if available)
TreeFam:
Gene Tree for LOC100133077 (if available)

No data available for Orthologs for LOC100133077 Gene

Paralogs for LOC100133077 Gene

No data available for Paralogs for LOC100133077 Gene

Variants for LOC100133077 Gene

Sequence variations from dbSNP and Humsavar for LOC100133077 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1564867162 uncertain-significance, not provided 137,878,108(-) T/C intron_variant
rs767457983 uncertain-significance, not provided 137,877,963(-) C/T intron_variant
rs1000213236 -- 137,877,020(-) G/A intron_variant
rs1000224014 -- 137,873,557(-) C/T intron_variant
rs1000262526 -- 137,889,618(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100133077 Gene

Variant ID Type Subtype PubMed ID
dgv145e19 CNV loss 19470904
dgv4183n106 CNV deletion 24896259
dgv4184n106 CNV deletion 24896259
dgv4185n106 CNV duplication 24896259
dgv4545e59 CNV duplication 20981092
dgv48e194 CNV deletion 18987734
esv2137371 CNV deletion 18987734
esv26628 CNV gain 19812545
esv2666889 CNV deletion 23128226
esv3545672 CNV deletion 23714750
esv3622046 CNV loss 21293372
esv4238 CNV loss 18987735
nsv1076231 CNV deletion 25765185
nsv1078093 CNV duplication 25765185
nsv1147231 CNV duplication 26484159
nsv1148203 CNV deletion 26484159
nsv415473 CNV deletion 16902084
nsv415556 CNV deletion 16902084
nsv509338 CNV insertion 20534489
nsv512132 CNV loss 21212237
nsv512133 CNV loss 21212237
nsv6775 CNV insertion 18451855
nsv819257 CNV gain 19587683
nsv825200 CNV gain 20364138

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100133077 Gene

Disorders for LOC100133077 Gene

No disorders were found for LOC100133077 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100133077 Gene

Publications for LOC100133077 Gene

No publications were found for LOC100133077 Gene.

No data available for External Links for LOC100133077 Gene

Products for LOC100133077 Gene

Sources for LOC100133077 Gene