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Aliases for LOC100132686 Gene
Data sources for LOC100132686 Gene:
Subcategory (RNA class) for LOC100132686 Gene
lncRNA
Aliases for LOC100132686 Gene
- Uncharacterized LOC100132686 (NCBI Entrez Gene)
- Novel Transcript, Antisense To C11orf34 (Ensembl)
- LOC100132686 Protein (UniProtKB/TrEMBL)
- HSALNG0087192 (LncBook)
- AP002884.3 (Ensembl)
External Ids for LOC100132686 Gene
- NCBI Entrez Gene: 100132686
- Ensembl: ENSG00000268472
- UniProtKB/TrEMBL: Q8NEQ1
Previous GeneCards Identifiers for LOC100132686 Gene
- GC11U901118
- GC11P111637
- GC11P112132
Summaries for LOC100132686 Gene
GeneCards Summary for LOC100132686 Gene
LOC100132686 (Uncharacterized LOC100132686) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC100132686 Gene
- NCBI Entrez Gene (100132686)
- Ensembl (ENSG00000268472)
- UniProtKB/TrEMBL (Q8NEQ1)
- Open Targets Platform(ENSG00000268472)
- Search for LOC100132686 at DataMed
- Search for LOC100132686 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100132686 Gene
Genomics for LOC100132686 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC100132686 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J112257 | Enhancer | 0.3 | ENCODE | 0.7 | -3.0 | -2997 | 0.3 | HLF | lnc-IL18-2-001 LINC02762 LOC100132686 PLET1 PTS |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100132686 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the LOC100132686 gene promoter:
-
- COUP
- CUTL1
- Elk-1
- Evi-1
- FAC1
- Nkx6-1
- Pbx1a
- POU2F1
- POU2F1a
- TBP
Genomic Locations for LOC100132686 Gene
Latest Assembly
- chr11:112,260,265-112,261,396
- (GRCh38/hg38)
- Size:
- 1,132 bases
- Orientation:
- Plus strand
Previous Assembly
- chr11:112,130,988-112,132,119
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 1,132 bases
- Orientation:
- Plus strand
- chr11:112,130,988-112,132,117
- (GRCh37/hg19 by Ensembl)
- Size:
- 1,130 bases
- Orientation:
- Plus strand
Genomic View for LOC100132686 Gene
Genes around LOC100132686 on UCSC Golden Path with GeneCards custom track
LOC100132686 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q23.1 by Entrez Gene
- 11q23.1 by Ensembl
LOC100132686 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100132686 Gene
Proteins for LOC100132686 Gene
-
Protein details for LOC100132686 Gene (UniProtKB/TrEMBL)
- Protein Symbol:
- Q8NEQ1-Q8NEQ1_HUMAN
- Recommended name:
- LOC100132686 protein
- Protein Accession:
- Q8NEQ1
Protein attributes for LOC100132686 Gene
- Size:
- 37 amino acids
- Molecular mass:
- 4262 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for LOC100132686 Gene
No Post-translational modifications
Antibodies for research
Protein products for research
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100132686
- Origene Custom Protein Services for LOC100132686
Assay products for research
No data available for DME Specific Peptides for LOC100132686 Gene
Domains & Families for LOC100132686 Gene
Protein Domains for LOC100132686 Gene
- ProtoNet:
Suggested Antigen Peptide Sequences for LOC100132686 Gene
- GenScript: Design optimal peptide antigens:
-
- LOC100132686 protein (Q8NEQ1_HUMAN)
No data available for Gene Families , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100132686 Gene
Function for LOC100132686 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100132686 Gene
Localization for LOC100132686 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100132686 Gene
Transcripts for LOC100132686 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100132686 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000783CFD_9606 | lncRNA | 1132 | 1 |
Ensembl: ENST00000595053 (view in UCSC) , |
| URS00008E397B_9606 | lncRNA | 1132 | 1 |
RefSeq: NR_133566, |
| URS0001BE199E_9606 | lncRNA | 1132 | 1 |
LncBook: HSALNT0181157, |
LOC100132686 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC100132686 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC100132686 Gene
- GeneLoc Exon Structure for
- LOC100132686
Expression for LOC100132686 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100132686
SOURCE GeneReport for Unigene cluster for LOC100132686 Gene:
Hs.650455Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100132686 Gene
Orthologs for LOC100132686 Gene
No data available for Orthologs for LOC100132686 Gene
Paralogs for LOC100132686 Gene
No data available for Paralogs for LOC100132686 Gene
Variants for LOC100132686 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Gene Damage Index Score:
3.30;
53.17% of all genes are more intolerant (likely to be disease-causing)
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for LOC100132686 Gene
Disorders for LOC100132686 Gene
Additional Disease Information for LOC100132686
- Open Targets Platform
- Open Targets Platform
No disorders were found for LOC100132686 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100132686 Gene
Publications for LOC100132686 Gene
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 13
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
No data available for Mastermind for LOC100132686 Gene
Products for LOC100132686 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100132686
- Origene Custom Protein Services for LOC100132686
- Browse OriGene Inhibitory RNA Products For LOC100132686
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC100132686
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC100132686
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC100132686
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC100132686
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC100132686
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC100132686
Sources for LOC100132686 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB