Aliases for LOC100132356 Gene

Data sources for LOC100132356 Gene:

RNA type for LOC100132356 Gene

lncRNA

Aliases for LOC100132356 Gene

External Ids for LOC100132356 Gene

Previous GeneCards Identifiers for LOC100132356 Gene

  • GC05M043066

Summaries for LOC100132356 Gene

GeneCards Summary for LOC100132356 Gene

LOC100132356 (Uncharacterized LOC100132356) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100132356 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100132356 Gene

Genomics for LOC100132356 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100132356 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J043063 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.5 454 6.2 BCLAF1 SP1 ZNF207 NCOR1 IKZF1 ZNF600 MYC SIX5 SSRP1 ZNF580 ZNF131 HSALNG0041486 LOC100132356 LOC100506639 piR-56098 SELENOP RPL29P12 EEF1A1P19 C5orf34 ANXA2R
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100132356 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100132356 Gene

Latest Assembly
chr5:43,065,187-43,066,971
(GRCh38/hg38)
Size:
1,785 bases
Orientation:
Minus strand

Previous Assembly
chr5:43,065,289-43,067,073
(GRCh37/hg19 by Entrez Gene)
Size:
1,785 bases
Orientation:
Minus strand

Genomic View for LOC100132356 Gene

Genes around LOC100132356 on UCSC Golden Path with GeneCards custom track
LOC100132356 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100132356 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100132356 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100132356 Gene

Proteins for LOC100132356 Gene

Post-translational modifications for LOC100132356 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100132356 Gene

Domains & Families for LOC100132356 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100132356 Gene

Function for LOC100132356 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100132356 Gene

Localization for LOC100132356 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100132356 Gene

Pathways & Interactions for LOC100132356 Gene

PathCards logo

SuperPathways for LOC100132356 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100132356 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100132356 Gene

Drugs & Compounds for LOC100132356 Gene

No Compound Related Data Available

Transcripts for LOC100132356 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100132356 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075E938_9606 lncRNA 1785 1

RefSeq: NR_034127,

URS0001BEAB21_9606 lncRNA 3456 1

LncBook: HSALNT0087217,

LOC100132356 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100132356 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100132356 Gene

No ASD Table

Relevant External Links for LOC100132356 Gene

GeneLoc Exon Structure for
LOC100132356

Expression for LOC100132356 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100132356 Gene

mRNA expression in normal human tissues for LOC100132356 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100132356

SOURCE GeneReport for Unigene cluster for LOC100132356 Gene:

Hs.726831
genes like me logo Genes that share expression patterns with LOC100132356: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100132356 Gene

Orthologs for LOC100132356 Gene

No data available for Orthologs and Evolution for LOC100132356 Gene

Paralogs for LOC100132356 Gene

No data available for Paralogs for LOC100132356 Gene

Variants for LOC100132356 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100132356 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100132356 Gene

Variant ID Type Subtype PubMed ID
nsv462126 CNV gain 19166990
nsv597925 CNV gain 21841781
nsv950674 CNV deletion 24416366

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100132356 Gene

Disorders for LOC100132356 Gene

No disorders were found for LOC100132356 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100132356 Gene

Publications for LOC100132356 Gene

  1. Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. (PMID: 16303743) Otsuki T … Isogai T (DNA research : an international journal for rapid publication of reports on genes and genomes 2005) 3
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

No data available for Mastermind for LOC100132356 Gene

Products for LOC100132356 Gene

Sources for LOC100132356 Gene