LOC100132239 Gene (Pseudogene)

Calcium Activated Nucleotidase 1 Pseudogene

GC06P025154
GIFtS:
3
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Aliases for LOC100132239 Gene

Aliases for LOC100132239 Gene

  • Calcium Activated Nucleotidase 1 Pseudogene 3

External Ids for LOC100132239 Gene

Previous GeneCards Identifiers for LOC100132239 Gene

  • GC06U901206
  • GC06P025264

Summaries for LOC100132239 Gene

GeneCards Summary for LOC100132239 Gene

LOC100132239 (Calcium Activated Nucleotidase 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100132239 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100132239 Gene

Genomics for LOC100132239 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100132239 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J025154 Enhancer 0.6 Ensembl ENCODE dbSUPER 600.7 +1.7 1707 0.5 SMARCE1 ENSG00000262400 LOC100132239 lnc-CARMIL1-6 piR-55948-091 RIPOR2 CARMIL1 CMAHP
GH06J025151 Enhancer 0.2 Ensembl 600.7 -0.2 -224 1 ENSG00000262400 LOC100132239 lnc-CARMIL1-6 lnc-RIPOR2-5 RIPOR2 CARMIL1 CMAHP
GH06J025155 Enhancer 0.5 Ensembl ENCODE dbSUPER 0.7 +3.9 3875 2.8 CMAHP ENSG00000262400 LOC100132239 piR-55948-091 lnc-CARMIL1-6 RIPOR2 CARMIL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100132239 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100132239 Gene

Genomic Locations for LOC100132239 Gene
chr6:25,152,525-25,155,420
(GRCh38/hg38)
Size:
2,896 bases
Orientation:
Plus strand
chr6:25,152,775-25,155,610
(GRCh37/hg19)
Size:
2,836 bases
Orientation:
Plus strand

Genomic View for LOC100132239 Gene

Genes around LOC100132239 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100132239 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100132239 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100132239 Gene

Proteins for LOC100132239 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100132239 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100132239 Gene

Domains & Families for LOC100132239 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100132239 Gene

Function for LOC100132239 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100132239 Gene

Localization for LOC100132239 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100132239 Gene

Pathways & Interactions for LOC100132239 Gene

PathCards logo

SuperPathways for LOC100132239 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100132239 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100132239 Gene

Drugs & Compounds for LOC100132239 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC100132239 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100132239 Gene

No ASD Table

Relevant External Links for LOC100132239 Gene

GeneLoc Exon Structure for
LOC100132239

No data available for mRNA/cDNA for LOC100132239 Gene

Expression for LOC100132239 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100132239 Gene

mRNA expression in normal human tissues for LOC100132239 Gene
mRNA expression by GTEx for LOC100132239 Gene
genes like me logo Genes that share expression patterns with LOC100132239: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100132239 Gene

Orthologs for LOC100132239 Gene

No data available for Orthologs and Evolution for LOC100132239 Gene

Paralogs for LOC100132239 Gene

No data available for Paralogs for LOC100132239 Gene

Variants for LOC100132239 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100132239 Gene

Disorders for LOC100132239 Gene

No disorders were found for LOC100132239 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100132239 Gene

Publications for LOC100132239 Gene

No publications were found for LOC100132239 Gene.

No data available for Mastermind for LOC100132239 Gene

Products for LOC100132239 Gene

Sources for LOC100132239 Gene