Aliases for LOC100132229 Gene

Aliases for LOC100132229 Gene

  • Nuclear Pore Associated Protein 1 Pseudogene 3
  • Putative UPF0607 Protein ENSP00000382826 3

External Ids for LOC100132229 Gene

Previous GeneCards Identifiers for LOC100132229 Gene

  • GC08U901050
  • GC08M026926
  • GC08M026927
  • GC08M026869

Summaries for LOC100132229 Gene

GeneCards Summary for LOC100132229 Gene

LOC100132229 (Nuclear Pore Associated Protein 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100132229 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100132229 Gene

Genomics for LOC100132229 Gene

GeneHancer (GH) Regulatory Elements for LOC100132229 Gene

Promoters and enhancers for LOC100132229 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J027033 Enhancer 0.7 Ensembl ENCODE 0.3 -21.2 -21217 0.7 POLR2A GABPA JUND SP1 FOS FOSL1 CREM FOSL2 ATF1 ADRA1A RF01061-176 LOC100132229
GH08J027032 Enhancer 0.2 Ensembl 0.4 -19.7 -19657 0.2 ADRA1A LOC100132229 RF01061-176
GH08J027034 Enhancer 0.2 Ensembl 0.3 -20.1 -20057 0.2 ADRA1A RF01061-176 LOC100132229
GH08J027047 Enhancer 0.2 FANTOM5 0.3 -34.8 -34773 0.3 MIR548H4 RF01061-176 LOC100132229
GH08J027037 Enhancer 0.2 Ensembl 0.3 -25.6 -25557 0.4 ADRA1A RF01061-176 LOC100132229
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100132229 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100132229 gene promoter:
  • C/EBPalpha
  • C/EBPbeta
  • E47
  • En-1
  • Hand1
  • HSF1 (long)
  • HSF1short
  • POU2F1
  • POU6F1 (c2)
  • Sox5

Genomic Locations for LOC100132229 Gene

Genomic Locations for LOC100132229 Gene
chr8:27,010,456-27,012,444
(GRCh38/hg38)
Size:
1,989 bases
Orientation:
Minus strand
chr8:26,867,973-26,869,961
(GRCh37/hg19)
Size:
1,989 bases
Orientation:
Minus strand

Genomic View for LOC100132229 Gene

Genes around LOC100132229 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100132229 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100132229 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100132229 Gene

Proteins for LOC100132229 Gene

Post-translational modifications for LOC100132229 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100132229 Gene

Domains & Families for LOC100132229 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100132229 Gene

Function for LOC100132229 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100132229 Gene

Localization for LOC100132229 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100132229 Gene

Pathways & Interactions for LOC100132229 Gene

PathCards logo

SuperPathways for LOC100132229 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100132229 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100132229 Gene

Drugs & Compounds for LOC100132229 Gene

No Compound Related Data Available

Transcripts for LOC100132229 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100132229 Gene

No ASD Table

Relevant External Links for LOC100132229 Gene

GeneLoc Exon Structure for
LOC100132229

No data available for mRNA/cDNA for LOC100132229 Gene

Expression for LOC100132229 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100132229 Gene

mRNA expression in normal human tissues for LOC100132229 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100132229 Gene

This gene is overexpressed in Testis (x52.7).
genes like me logo Genes that share expression patterns with LOC100132229: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100132229 Gene

Orthologs for LOC100132229 Gene

No data available for Orthologs and Evolution for LOC100132229 Gene

Paralogs for LOC100132229 Gene

No data available for Paralogs for LOC100132229 Gene

Variants for LOC100132229 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100132229 Gene

Disorders for LOC100132229 Gene

No disorders were found for LOC100132229 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100132229 Gene

Publications for LOC100132229 Gene

  1. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C … Lander ES (Nature 2006) 3 56

No data available for External Links for LOC100132229 Gene

Products for LOC100132229 Gene

Sources for LOC100132229 Gene