Aliases for LOC100132215 Gene

Data sources for LOC100132215 Gene:

Subcategory (RNA class) for LOC100132215 Gene

lncRNA

Aliases for LOC100132215 Gene

External Ids for LOC100132215 Gene

Previous GeneCards Identifiers for LOC100132215 Gene

  • GC02U901263
  • GC02M063125
  • GC02M063272
  • GC02M063043

Summaries for LOC100132215 Gene

GeneCards Summary for LOC100132215 Gene

LOC100132215 (Uncharacterized LOC100132215) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100132215 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100132215 Gene

Genomics for LOC100132215 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100132215 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J063046 Promoter/Enhancer 2 VISTA EPDnew Ensembl ENCODE 250.7 +1.3 1291 6.2 TBP MXD4 SP1 FEZF1 SMAD5 MBD2 NONO ZIC2 HOMEZ THAP11 LOC100132215 OTX1 lnc-EHBP1-1 VPS54 WDPCP piR-57460-382 EHBP1
GH02J062504 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 4.8 +544.5 544546 2.4 TBP SIX5 NR2C1 ETS1 ZNF217 NONO ZNF610 ZNF395 REST GTF2E2 TMEM17 RPL37P13 lnc-WDPCP-9 XPO1 ENSG00000226622 CCT4 ENSG00000236498 EHBP1 LOC100132215 OTX1
GH02J062575 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 5.6 +472.3 472256 5 CEBPA IRF2 ZFP64 HOMEZ KDM6A CEBPB FOXA2 ZNF511 SMAD4 MAFF ENSG00000226622 EHBP1 OTX1 LOC100132215 CCT4 HSALNG0015392 HSALNG0015393 TMEM17
GH02J062568 Enhancer 1.3 Ensembl ENCODE dbSUPER 5.1 +480.5 480457 4 CHD2 MXD4 FEZF1 CEBPA HOMEZ KDM6A THAP11 SIN3A FOXA2 ZNF511 EHBP1 ENSG00000226622 OTX1 LOC100132215 HSALNG0015392 RSL24D1P2 TMEM17
GH02J063073 Enhancer 0.5 Ensembl 11.3 -23.4 -23409 0.4 CEBPA ETV4 CEBPG ZNF7 ZNF121 OTX1 LOC100132215 WDPCP lnc-OTX1-2 ENSG00000286480 MDH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100132215 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100132215 gene promoter:
  • AREB6
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • Evi-1
  • HOXA5
  • POU2F1

Genomic Locations for LOC100132215 Gene

Latest Assembly
chr2:62,957,326-63,050,592
(GRCh38/hg38)
Size:
93,267 bases
Orientation:
Minus strand

Previous Assembly
chr2:63,271,057-63,275,656
(GRCh37/hg19 by Entrez Gene)
Size:
4,600 bases
Orientation:
Minus strand

chr2:63,271,057-63,275,775
(GRCh37/hg19 by Ensembl)
Size:
4,719 bases
Orientation:
Minus strand

Genomic View for LOC100132215 Gene

Genes around LOC100132215 on UCSC Golden Path with GeneCards custom track
LOC100132215 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100132215 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100132215 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100132215 Gene

Proteins for LOC100132215 Gene

Post-translational modifications for LOC100132215 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100132215 Gene

Domains & Families for LOC100132215 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100132215 Gene

Function for LOC100132215 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100132215 Gene

Localization for LOC100132215 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100132215 Gene

Pathways & Interactions for LOC100132215 Gene

PathCards logo

SuperPathways for LOC100132215 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100132215 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100132215 Gene

Drugs & Compounds for LOC100132215 Gene

No Compound Related Data Available

Transcripts for LOC100132215 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100132215 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000E62F0_9606 lncRNA 2069 4

RefSeq: NR_027069,

Ensembl: ENST00000429952 (view in UCSC) ,

LNCipedia: lnc-WDPCP-1:3,

NONCODE: NONHSAT071042.2,

URS0000373E84_9606 lncRNA 398 4

Ensembl: ENST00000412297 (view in UCSC) ,

LncBook: HSALNT0032556,

LNCipedia: lnc-WDPCP-1:4,

NONCODE: NONHSAT071046.2,

URS00002D9CC1_9606 lncRNA 798 3

Ensembl: ENST00000437346 (view in UCSC) ,

LNCipedia: lnc-WDPCP-1:1,

NONCODE: NONHSAT071045.2,

URS000075B488_9606 lncRNA 1933 2

RefSeq: NR_033389,

LNCipedia: lnc-WDPCP-1:20,

URS00001283EB_9606 lncRNA 540 2

Ensembl: ENST00000413549 (view in UCSC) ,

LNCipedia: lnc-WDPCP-1:2,

LOC100132215 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100132215 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100132215 Gene

No ASD Table

Relevant External Links for LOC100132215 Gene

GeneLoc Exon Structure for
LOC100132215

Expression for LOC100132215 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100132215 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100132215

SOURCE GeneReport for Unigene cluster for LOC100132215 Gene:

Hs.656781
genes like me logo Genes that share expression patterns with LOC100132215: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100132215 Gene

Orthologs for LOC100132215 Gene

Evolution for LOC100132215 Gene

ENSEMBL:
Gene Tree for LOC100132215 (if available)
TreeFam:
Gene Tree for LOC100132215 (if available)

No data available for Orthologs for LOC100132215 Gene

Paralogs for LOC100132215 Gene

No data available for Paralogs for LOC100132215 Gene

Variants for LOC100132215 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100132215 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100132215 Gene

Variant ID Type Subtype PubMed ID
nsv1004678 CNV loss 25217958
nsv7313 OTHER inversion 18451855

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100132215 Gene

Disorders for LOC100132215 Gene

Additional Disease Information for LOC100132215

Open Targets Platform
Open Targets Platform

No disorders were found for LOC100132215 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100132215 Gene

Publications for LOC100132215 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100132215 Gene

Products for LOC100132215 Gene

Sources for LOC100132215 Gene