LOC100132215 Gene (RNA Gene)

Uncharacterized LOC100132215

GC02M063043
GIFtS:
12

Aliases for LOC100132215 Gene

Subcategory (RNA class) for LOC100132215 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC100132215 Gene

  • Uncharacterized LOC100132215 3
  • HSALNG0015409 167
  • NONHSAG027924 92
  • HSALNG0015410 167
  • Lnc-WDPCP-1 168

External Ids for LOC100132215 Gene

Previous GeneCards Identifiers for LOC100132215 Gene

  • GC02U901263
  • GC02M063125
  • GC02M063272
  • GC02M062957

Summaries for LOC100132215 Gene

GeneCards Summary for LOC100132215 Gene

LOC100132215 (Uncharacterized LOC100132215) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100132215 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100132215 Gene

Genomics for LOC100132215 Gene

GeneHancer (GH) Regulatory Elements for LOC100132215 Gene

Promoters and enhancers for LOC100132215 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J063046 Promoter/Enhancer 2 VISTA EPDnew Ensembl ENCODE 500.7 -0.8 -780 6.2 ZBTB40 NRF1 POLR2G USF1 SP1 GTF2E2 PHF8 TEAD4 ZFX ZNF10 ENSG00000231609 LOC100132215 OTX1 lnc-EHBP1-1 VPS54 WDPCP EHBP1
GH02J063043 Promoter/Enhancer 1.1 Ensembl ENCODE 0.7 +4.1 4100 1.7 POLR2G ZBTB5 HINFP HDAC2 POLR2A PBX2 ZNF384 YY1 NANOG PHF8 ENSG00000231609 LOC100132215 piR-57460-382 EHBP1
GH02J063034 Enhancer 0.8 UCNEbase Ensembl 0.4 +12.9 12920 3.2 USF1 FOS MITF GATA2 JUN CHD7 USF2 TOE1 OTX1 LOC100132215 ENSG00000231609 piR-57460-382 EHBP1
GH02J063040 Enhancer 0.8 VISTA 0.4 +7.0 6992 1.3 MYC NFRKB ZBTB17 TCF7L2 TRIM24 CEBPG POLR2G CEBPB ZNF592 ZNF644 ENSG00000231609 LOC100132215 piR-57460-382 EHBP1
GH02J063029 Enhancer 0.5 Ensembl 0.4 +19.2 19220 1 FOS GATA2 JUN POLR2A CBFA2T3 NR2F2 piR-57460-382 LOC100132215 ENSG00000231609 EHBP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100132215 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100132215 gene promoter:
  • AREB6
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • Evi-1
  • HOXA5
  • POU2F1

Genomic Locations for LOC100132215 Gene

Genomic Locations for LOC100132215 Gene
chr2:63,043,922-63,048,521
(GRCh38/hg38)
Size:
4,600 bases
Orientation:
Minus strand

Genomic View for LOC100132215 Gene

Genes around LOC100132215 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100132215 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100132215 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100132215 Gene

Proteins for LOC100132215 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100132215 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100132215 Gene

Domains & Families for LOC100132215 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100132215 Gene

Function for LOC100132215 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC100132215 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100132215 Gene

Localization for LOC100132215 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100132215 Gene

Pathways & Interactions for LOC100132215 Gene

PathCards logo

SuperPathways for LOC100132215 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100132215 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100132215 Gene

Drugs & Compounds for LOC100132215 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC100132215 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC100132215 Gene

18 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
17 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100132215 Gene

No ASD Table

Relevant External Links for LOC100132215 Gene

GeneLoc Exon Structure for
LOC100132215

Expression for LOC100132215 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100132215 Gene

mRNA expression in normal human tissues for LOC100132215 Gene
mRNA expression by GTEx for LOC100132215 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100132215

SOURCE GeneReport for Unigene cluster for LOC100132215 Gene:

Hs.656781
genes like me logo Genes that share expression patterns with LOC100132215: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100132215 Gene

Orthologs for LOC100132215 Gene

No data available for Orthologs and Evolution for LOC100132215 Gene

Paralogs for LOC100132215 Gene

No data available for Paralogs for LOC100132215 Gene

Variants for LOC100132215 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC100132215 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100132215 Gene

Variant ID Type Subtype PubMed ID
nsv1004678 CNV loss 25217958
nsv7313 OTHER inversion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100132215 Gene

Disorders for LOC100132215 Gene

No disorders were found for LOC100132215 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100132215 Gene

Publications for LOC100132215 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LOC100132215 Gene

Products for LOC100132215 Gene

Sources for LOC100132215 Gene