Aliases for LOC100132078 Gene

Data sources for LOC100132078 Gene:

RNA type for LOC100132078 Gene

lncRNA

Aliases for LOC100132078 Gene

External Ids for LOC100132078 Gene

Previous GeneCards Identifiers for LOC100132078 Gene

  • GC11U900984
  • GC11M110790
  • GC11M111286

Summaries for LOC100132078 Gene

GeneCards Summary for LOC100132078 Gene

LOC100132078 (Uncharacterized LOC100132078) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100132078 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100132078 Gene

Genomics for LOC100132078 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100132078 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100132078 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100132078 Gene

Latest Assembly
chr11:111,414,241-111,418,186
(GRCh38/hg38)
Size:
3,946 bases
Orientation:
Minus strand

Previous Assembly
chr11:111,284,967-111,288,911
(GRCh37/hg19 by Entrez Gene)
Size:
3,945 bases
Orientation:
Minus strand

chr11:111,284,967-111,288,911
(GRCh37/hg19 by Ensembl)
Size:
3,945 bases
Orientation:
Minus strand

Genomic View for LOC100132078 Gene

Genes around LOC100132078 on UCSC Golden Path with GeneCards custom track
LOC100132078 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100132078 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100132078 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100132078 Gene

Proteins for LOC100132078 Gene

Post-translational modifications for LOC100132078 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100132078 Gene

Domains & Families for LOC100132078 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100132078 Gene

Function for LOC100132078 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100132078 Gene

Localization for LOC100132078 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100132078 Gene

Pathways & Interactions for LOC100132078 Gene

PathCards logo

SuperPathways for LOC100132078 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100132078 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100132078 Gene

Drugs & Compounds for LOC100132078 Gene

No Compound Related Data Available

Transcripts for LOC100132078 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100132078 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000022BDC5_9606 lncRNA 2591 3

Ensembl: ENST00000528614 (view in UCSC) ,

LNCipedia: lnc-BTG4-2:1,

NONCODE: NONHSAT024107.2,

URS000075DA32_9606 lncRNA 2587 1

RefSeq: NR_046085,

LOC100132078 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100132078 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100132078 Gene

No ASD Table

Relevant External Links for LOC100132078 Gene

GeneLoc Exon Structure for
LOC100132078

Expression for LOC100132078 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100132078 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100132078

SOURCE GeneReport for Unigene cluster for LOC100132078 Gene:

Hs.672662
genes like me logo Genes that share expression patterns with LOC100132078: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100132078 Gene

Orthologs for LOC100132078 Gene

Evolution for LOC100132078 Gene

ENSEMBL:
Gene Tree for LOC100132078 (if available)
TreeFam:
Gene Tree for LOC100132078 (if available)

No data available for Orthologs for LOC100132078 Gene

Paralogs for LOC100132078 Gene

No data available for Paralogs for LOC100132078 Gene

Variants for LOC100132078 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100132078 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100132078 Gene

Variant ID Type Subtype PubMed ID
nsv1053752 CNV gain 25217958
nsv1054465 CNV gain 25217958
nsv471914 CNV novel sequence insertion 20440878
nsv832268 CNV loss 17160897

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100132078 Gene

Disorders for LOC100132078 Gene

Additional Disease Information for LOC100132078

Open Targets Platform
Open Targets Platform

No disorders were found for LOC100132078 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100132078 Gene

Publications for LOC100132078 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100132078 Gene

Products for LOC100132078 Gene

Sources for LOC100132078 Gene