Aliases for LOC100132077 Gene

Subcategory (RNA class) for LOC100132077 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100132077 Gene

  • Uncharacterized LOC100132077 3
  • NONHSAG052896.2 91
  • HSALNG0072907 164
  • Lnc-MFSD14B-3 165

External Ids for LOC100132077 Gene

Previous GeneCards Identifiers for LOC100132077 Gene

  • GC09U901073
  • GC09P096141
  • GC09P097097

Summaries for LOC100132077 Gene

GeneCards Summary for LOC100132077 Gene

LOC100132077 (Uncharacterized LOC100132077) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100132077 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100132077 Gene

Genomics for LOC100132077 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100132077 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J094332 Promoter 1.2 Ensembl CraniofacialAtlas 600.7 +0.5 525 1.6 REST NRF1 MGA POLR2A MTA3 CTBP1 NFIC BCOR CEBPG MNT ENSG00000232063 LOC100132077 MFSD14B NUTM2F piR-61153-001 RF00017-7724
GH09J094330 Enhancer 0.2 Ensembl 600.7 -1.6 -1575 0.6 ENSG00000232063 LOC100132077 piR-31001-001 NUTM2F MFSD14B RF00017-7724
GH09J094346 Enhancer 0.6 Ensembl 0.4 +21.3 21325 15.2 DDX20 MEF2D ZNF592 NR2F1 ZBTB33 DIDO1 IRF9 TAF7 SP1 PYGO2 MFSD14B ENSG00000232063 NUTM2F ZNF169 PTMAP12 lnc-MFSD14B-2 LOC100132077 RF00017-7724
GH09J094340 Enhancer 0.2 Ensembl 0.4 +9.1 9125 1.6 LOC107987023 MFSD14B ENSG00000232063 LOC100132077 lnc-MFSD14B-2 NUTM2F RF00017-7724
GH09J094337 Enhancer 0.2 Ensembl 0.4 +6.4 6425 3 ENSG00000224815 lnc-NUTM2F-2 MFSD14B LOC107987023 ENSG00000232063 LOC100132077 NUTM2F RF00017-7724
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100132077 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100132077 Gene

Genomic Locations for LOC100132077 Gene
chr9:94,332,476-94,360,949
(GRCh38/hg38)
Size:
28,474 bases
Orientation:
Plus strand

Genomic View for LOC100132077 Gene

Genes around LOC100132077 on UCSC Golden Path with GeneCards custom track
LOC100132077 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100132077 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100132077 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100132077 Gene

Proteins for LOC100132077 Gene

Post-translational modifications for LOC100132077 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100132077 Gene

Domains & Families for LOC100132077 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100132077 Gene

Function for LOC100132077 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100132077 Gene

Localization for LOC100132077 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100132077 Gene

Pathways & Interactions for LOC100132077 Gene

PathCards logo

SuperPathways for LOC100132077 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100132077 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100132077 Gene

Drugs & Compounds for LOC100132077 Gene

No Compound Related Data Available

Transcripts for LOC100132077 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100132077 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003774BC_9606 lncRNA 2162 4

RefSeq: NR_033937,

LncBook: HSALNT0152379,

LNCipedia: lnc-MFSD14B-3:1,

NONCODE: NONHSAT133310.2,

URS00009BA8D3_9606 lncRNA 2162 2

LncBook: HSALNT0152380,

NONCODE: NONHSAT219848.1,

LOC100132077 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100132077 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100132077 Gene

No ASD Table

Relevant External Links for LOC100132077 Gene

GeneLoc Exon Structure for
LOC100132077

Expression for LOC100132077 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100132077 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100132077

SOURCE GeneReport for Unigene cluster for LOC100132077 Gene:

Hs.679111
genes like me logo Genes that share expression patterns with LOC100132077: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100132077 Gene

Orthologs for LOC100132077 Gene

No data available for Orthologs and Evolution for LOC100132077 Gene

Paralogs for LOC100132077 Gene

No data available for Paralogs for LOC100132077 Gene

Variants for LOC100132077 Gene

Additional dbSNP identifiers (rs#s) for LOC100132077 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100132077 Gene

Variant ID Type Subtype PubMed ID
dgv1491e214 CNV gain 21293372
esv2761545 CNV gain 21179565
esv3573294 CNV loss 25503493
esv3621113 CNV gain 21293372
esv3621119 CNV gain 21293372
nsv1046906 CNV gain 25217958
nsv968733 CNV duplication 23825009
nsv972422 CNV duplication 23825009
nsv972784 CNV duplication 23825009
nsv972785 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100132077 Gene

Disorders for LOC100132077 Gene

No disorders were found for LOC100132077 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100132077 Gene

Publications for LOC100132077 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100132077 Gene

Products for LOC100132077 Gene

Sources for LOC100132077 Gene