Aliases for LOC100132057 Gene

Aliases for LOC100132057 Gene

  • Phosphodiesterase 4D Interacting Protein Pseudogene 3

External Ids for LOC100132057 Gene

Previous GeneCards Identifiers for LOC100132057 Gene

  • GC01U901793
  • GC01P146355
  • GC01P147888
  • GC01P148416
  • GC01P148403
  • GC01P148405
  • GC01P148409

Summaries for LOC100132057 Gene

GeneCards Summary for LOC100132057 Gene

LOC100132057 (Phosphodiesterase 4D Interacting Protein Pseudogene) is a Pseudogene.

Additional gene information for LOC100132057 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100132057 Gene

Genomics for LOC100132057 Gene

GeneHancer (GH) Regulatory Elements for LOC100132057 Gene

Promoters and enhancers for LOC100132057 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J148399 Promoter 0.3 Ensembl 500.7 -0.6 -582 3.8 ENSG00000231551 LOC100132057 RNVU1-3 lnc-NUDT4B-1-001 lnc-PPIAL4G-3 LINC01138
GH01J148420 Enhancer 0.2 Ensembl 0.4 +17.0 17018 0.2 piR-31603-003 lnc-PPIAL4G-11 LOC100132057 lnc-NUDT4B-1-001 ENSG00000231551 LINC01138
GH01J148417 Enhancer 0.2 Ensembl 0.4 +15.3 15318 0.4 piR-31603-003 lnc-PPIAL4G-11 LOC100132057 lnc-NUDT4B-1-001 ENSG00000231551 LINC01138
GH01J148419 Enhancer 0.2 Ensembl 0.4 +16.6 16618 0.2 piR-31603-003 lnc-PPIAL4G-11 LOC100132057 lnc-NUDT4B-1-001 ENSG00000231551 LINC01138
GH01J148426 Enhancer 0.2 Ensembl 0.4 +24.4 24418 1.4 lnc-NUDT4B-1-002 lnc-PPIAL4G-11 ENSG00000231551 LOC100132057 lnc-NUDT4B-1-001 LINC01138
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100132057 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100132057 gene promoter:
  • NRSF form 1
  • NRSF form 2
  • Pax-3

Genomic Locations for LOC100132057 Gene

Genomic Locations for LOC100132057 Gene
chr1:148,402,483-148,432,545
(GRCh38/hg38)
Size:
30,063 bases
Orientation:
Plus strand
chr1:147,887,350-147,904,683
(GRCh37/hg19)
Size:
17,334 bases
Orientation:
Plus strand

Genomic View for LOC100132057 Gene

Genes around LOC100132057 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100132057 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100132057 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100132057 Gene

Proteins for LOC100132057 Gene

Post-translational modifications for LOC100132057 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100132057 Gene

Domains & Families for LOC100132057 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100132057 Gene

Function for LOC100132057 Gene

Phenotypes for LOC100132057 Gene

genes like me logo Genes that share phenotypes with LOC100132057: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100132057 Gene

Localization for LOC100132057 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100132057 Gene

Pathways & Interactions for LOC100132057 Gene

PathCards logo

SuperPathways for LOC100132057 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100132057 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100132057 Gene

Drugs & Compounds for LOC100132057 Gene

No Compound Related Data Available

Transcripts for LOC100132057 Gene

mRNA/cDNA for LOC100132057 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100132057 Gene

No ASD Table

Relevant External Links for LOC100132057 Gene

GeneLoc Exon Structure for
LOC100132057

Expression for LOC100132057 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100132057 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100132057

genes like me logo Genes that share expression patterns with LOC100132057: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100132057 Gene

Orthologs for LOC100132057 Gene

No data available for Orthologs and Evolution for LOC100132057 Gene

Paralogs for LOC100132057 Gene

No data available for Paralogs for LOC100132057 Gene

Variants for LOC100132057 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100132057 Gene

Variant ID Type Subtype PubMed ID
dgv187n106 CNV deletion 24896259
dgv327n100 CNV gain 25217958
dgv66e199 CNV deletion 23128226
esv2660400 CNV deletion 23128226
esv2667036 CNV deletion 23128226
esv2677125 CNV deletion 23128226
esv2761299 CNV gain+loss 21179565
esv27827 CNV gain 19812545
esv3572675 CNV gain 25503493
nsv1003688 CNV gain 25217958
nsv1005055 CNV loss 25217958
nsv1078224 CNV deletion 25765185
nsv1112548 CNV deletion 24896259
nsv1132304 CNV duplication 24896259
nsv1143453 CNV deletion 24896259
nsv509457 CNV insertion 20534489
nsv510962 OTHER complex 20534489
nsv510984 OTHER inversion 20534489
nsv547650 CNV loss 21841781
nsv946218 CNV duplication 23825009
nsv946327 CNV duplication 23825009
nsv946328 CNV duplication 23825009
nsv946329 CNV duplication 23825009
nsv951837 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC100132057 Gene

Disorders for LOC100132057 Gene

No disorders were found for LOC100132057 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100132057 Gene

Publications for LOC100132057 Gene

  1. A census of human soluble protein complexes. (PMID: 22939629) Havugimana PC … Emili A (Cell 2012) 3 54
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 54
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for LOC100132057 Gene

Products for LOC100132057 Gene

Sources for LOC100132057 Gene