Aliases for LOC100131635 Gene

Subcategory (RNA class) for LOC100131635 Gene

lncRNA

Number of RNA Genes sources:

0 / 14

Aliases for LOC100131635 Gene

  • HCG1645011-Like 3

External Ids for LOC100131635 Gene

Previous GeneCards Identifiers for LOC100131635 Gene

  • GC03U900900
  • GC03P188902
  • GC03P187420

Summaries for LOC100131635 Gene

GeneCards Summary for LOC100131635 Gene

LOC100131635 (HCG1645011-Like) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100131635 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100131635 Gene

Genomics for LOC100131635 Gene

GeneHancer (GH) Regulatory Elements for LOC100131635 Gene

Promoters and enhancers for LOC100131635 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J187719 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +17.6 17626 1.3 POLR2G NCOR1 KDM6A TCF7 ZBTB7A SKI TBX3 ZKSCAN8 FOXA2 SIN3A RTP2 LOC100131635 ENSG00000228804 lnc-RTP4-6
GH03J187715 Enhancer 0.8 ENCODE dbSUPER 0.4 +12.2 12222 0.2 CTCF ZSCAN5C REST RAD21 TRIM22 SMC3 DEK GTF2F1 ZBTB48 ZNF654 SST RTP2 LOC100131635 ENSG00000228804
GH03J187721 Enhancer 0.5 Ensembl dbSUPER 0.4 +18.7 18735 0.2 RBM22 AGO2 ENSG00000228804 RTP2 LOC100131635 lnc-RTP4-6
GH03J187724 Enhancer 0.6 dbSUPER 0.3 +25.6 25564 6.9 RBM22 NR2F2 POLR2A RXRA HNF4A PAF1 AGO2 MAX AGO1 IKZF1 ENSG00000228804 lnc-RTP4-6 RTP2 BCL6 LOC100131635
GH03J187720 Enhancer 0.3 Ensembl 0.4 +16.7 16735 0.2 ZBTB11 GABPB1 RTP2 LOC100131635 ENSG00000228804 lnc-RTP4-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100131635 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100131635 gene promoter:
  • HOXA5
  • Nkx3-1
  • Nkx3-1 v1
  • Nkx3-1 v2
  • Nkx3-1 v3
  • Nkx3-1 v4

Genomic Locations for LOC100131635 Gene

Genomic Locations for LOC100131635 Gene
chr3:187,702,366-187,732,415
(GRCh38/hg38)
Size:
30,050 bases
Orientation:
Plus strand
chr3:187,420,101-187,451,637
(GRCh37/hg19)
Size:
31,537 bases
Orientation:
Plus strand

Genomic View for LOC100131635 Gene

Genes around LOC100131635 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100131635 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100131635 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100131635 Gene

Proteins for LOC100131635 Gene

Post-translational modifications for LOC100131635 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100131635 Gene

Domains & Families for LOC100131635 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100131635 Gene

Function for LOC100131635 Gene

Phenotypes From GWAS Catalog for LOC100131635 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100131635 Gene

Localization for LOC100131635 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100131635 Gene

Pathways & Interactions for LOC100131635 Gene

PathCards logo

SuperPathways for LOC100131635 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100131635 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100131635 Gene

Drugs & Compounds for LOC100131635 Gene

No Compound Related Data Available

Transcripts for LOC100131635 Gene

mRNA/cDNA for LOC100131635 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100131635 Gene

No ASD Table

Relevant External Links for LOC100131635 Gene

GeneLoc Exon Structure for
LOC100131635

Expression for LOC100131635 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100131635 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100131635

SOURCE GeneReport for Unigene cluster for LOC100131635 Gene:

Hs.434448
genes like me logo Genes that share expression patterns with LOC100131635: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100131635 Gene

Orthologs for LOC100131635 Gene

No data available for Orthologs and Evolution for LOC100131635 Gene

Paralogs for LOC100131635 Gene

No data available for Paralogs for LOC100131635 Gene

Variants for LOC100131635 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100131635 Gene

SNP ID Clinical significance and condition Chr 03 pos Variation AA Info Type
717149 Benign: not provided 187,729,778(+) G/A SYNONYMOUS_VARIANT
729093 Benign: not provided 187,722,497(+) T/C SYNONYMOUS_VARIANT
729094 Likely Benign: not provided 187,729,200(+) C/T MISSENSE_VARIANT
734312 Likely Benign: not provided 187,725,085(+) G/A INTRON_VARIANT
781975 Likely Benign: not provided 187,728,547(+) A/G INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for LOC100131635 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100131635 Gene

Variant ID Type Subtype PubMed ID
esv1333666 CNV insertion 17803354
esv992102 CNV insertion 20482838

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100131635 Gene

Disorders for LOC100131635 Gene

Additional Disease Information for LOC100131635

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)

No disorders were found for LOC100131635 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100131635 Gene

Publications for LOC100131635 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 41 54

No data available for Mastermind for LOC100131635 Gene

Products for LOC100131635 Gene

Sources for LOC100131635 Gene