Aliases for LOC100131626 Gene

Data sources for LOC100131626 Gene:

RNA type for LOC100131626 Gene

lncRNA

Aliases for LOC100131626 Gene

External Ids for LOC100131626 Gene

Previous GeneCards Identifiers for LOC100131626 Gene

  • GC11U901086
  • GC11M117757

Summaries for LOC100131626 Gene

GeneCards Summary for LOC100131626 Gene

LOC100131626 (Uncharacterized LOC100131626) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100131626 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100131626 Gene

Genomics for LOC100131626 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100131626 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J118420 Enhancer 0.3 dbSUPER 250.7 -1.2 -1158 1.8 CEBPB HLF LOC100131626 IFT46 lnc-KMT2A-1 ENSG00000285827 KMT2A ATP5MG
GH11J118398 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +18.9 18852 6 ZNF207 MYC IKZF1 ZNF600 JUND ZNF580 POLR2A CEBPA YY1 MXD4 ATP5MG ENSG00000254873 ENSG00000285827 NONHSAG009760.2 ENSG00000255384 KMT2A TTC36 IFT46 SLC37A4 MN309413
GH11J118413 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +5.0 5021 3.3 MYC NCOR1 IKZF1 JUND ZNF592 POLR2A NFIC NONO REST HES1 HINFP VPS11 TRAPPC4 ENSG00000245869 BCL9L ARCN1 DDX6 UBE4A ENSG00000254909 RNF26
GH11J118424 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.7 -4.8 -4806 1.3 JUND ZBTB33 SP7 LOC105369519 IFT46 LOC100131626 lnc-KMT2A-1 KMT2A ENSG00000285827 ATP5MG
GH11J118417 Enhancer 0.3 Ensembl dbSUPER 0.7 +2.2 2152 0.6 LOC100131626 ENSG00000269944 ENSG00000285827 KMT2A ATP5MG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100131626 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100131626 Gene

Latest Assembly
chr11:118,381,219-118,420,053
(GRCh38/hg38)
Size:
38,835 bases
Orientation:
Minus strand

Previous Assembly
chr11:118,251,935-118,289,530
(GRCh37/hg19 by Entrez Gene)
Size:
37,596 bases
Orientation:
Minus strand

Genomic View for LOC100131626 Gene

Genes around LOC100131626 on UCSC Golden Path with GeneCards custom track
LOC100131626 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100131626 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100131626 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100131626 Gene

Proteins for LOC100131626 Gene

Post-translational modifications for LOC100131626 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100131626 Gene

Domains & Families for LOC100131626 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100131626 Gene

Function for LOC100131626 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100131626 Gene

Localization for LOC100131626 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100131626 Gene

Pathways & Interactions for LOC100131626 Gene

PathCards logo

SuperPathways for LOC100131626 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100131626 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100131626 Gene

Drugs & Compounds for LOC100131626 Gene

No Compound Related Data Available

Transcripts for LOC100131626 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100131626 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075D191_9606 lncRNA 576 4

RefSeq: NR_046369,

LncBook: HSALNT0181860,

LNCipedia: lnc-CD3D-6:1,

NONCODE: NONHSAT024464.2,

URS000075C641_9606 lncRNA 523 4

RefSeq: NR_046370,

LncBook: HSALNT0181859,

LNCipedia: lnc-CD3D-6:2,

NONCODE: NONHSAT024465.2,

URS0001BFA628_9606 lncRNA 6805 1

LncBook: HSALNT0181865,

URS0001BD9C00_9606 lncRNA 4615 1

LncBook: HSALNT0181864,

URS0001BCF42F_9606 lncRNA 572 1

LncBook: HSALNT0181860,

LOC100131626 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100131626 Gene

No ASD Table

Relevant External Links for LOC100131626 Gene

GeneLoc Exon Structure for
LOC100131626

No data available for mRNA/cDNA for LOC100131626 Gene

Expression for LOC100131626 Gene

SOURCE GeneReport for Unigene cluster for LOC100131626 Gene:

Hs.721614
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100131626 Gene

Orthologs for LOC100131626 Gene

No data available for Orthologs and Evolution for LOC100131626 Gene

Paralogs for LOC100131626 Gene

No data available for Paralogs for LOC100131626 Gene

Variants for LOC100131626 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100131626 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
rs142299294 Benign: not provided 118,390,723(-) A/G
NM_001204077.2(UBE4A):c.2835A>G (p.Ala945=)
SYNONYMOUS
rs370025001 Benign: not specified 118,384,947(-) TA/T
NM_001204077.2(UBE4A):c.2412+23del
INTRON

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100131626 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100131626 Gene

Variant ID Type Subtype PubMed ID
esv24734 CNV loss 19812545
esv2658105 CNV deletion 23128226
esv3627869 CNV loss 21293372
nsv1113440 CNV deletion 24896259
nsv512 CNV insertion 18451855
nsv972076 CNV duplication 23825009
nsv976516 CNV duplication 23825009

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100131626 Gene

Disorders for LOC100131626 Gene

No disorders were found for LOC100131626 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100131626 Gene

Publications for LOC100131626 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100131626 Gene

Products for LOC100131626 Gene

Sources for LOC100131626 Gene