Aliases for LOC100131496 Gene

Subcategory (RNA class) for LOC100131496 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC100131496 Gene

  • Uncharacterized LOC100131496 3
  • Novel Transcript, Antisense To ZMYND8 5
  • AL031666.2 5
  • Lnc-EYA2-3 165

External Ids for LOC100131496 Gene

Previous GeneCards Identifiers for LOC100131496 Gene

  • GC20U900374
  • GC20P045381
  • GC20P045948

Summaries for LOC100131496 Gene

GeneCards Summary for LOC100131496 Gene

LOC100131496 (Uncharacterized LOC100131496) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100131496 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100131496 Gene

Genomics for LOC100131496 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100131496 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J047313 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.2 9179 28 HNRNPL GATAD2A ATF7 TEAD4 PRDM10 ZNF629 REST TFE3 RFX1 LEF1 ZMYND8 TP53RK SLC35C2 NCOA3 ENSG00000229853 RPL35AP RNU6-497P EYA2 LOC100131496 ENSG00000273451
GH20J047312 Enhancer 0.9 ENCODE dbSUPER 0.4 -5.7 -5710 1.2 GATAD2A SOX13 RCOR2 RXRB ZBTB26 CTCF RBM22 TFDP1 NFXL1 CREM ZMYND8 lnc-SULF2-10 LOC100131496 EYA2
GH20J047308 Enhancer 0.6 ENCODE dbSUPER 0.4 -8.9 -8902 2.3 ZNF692 POLR2A RBM22 ZFP69B lnc-SULF2-10 ZMYND8 LOC100131496 EYA2
GH20J047310 Enhancer 0.4 dbSUPER 0.4 -7.2 -7238 1 RBM22 PRDM4 ZNF664 lnc-SULF2-10 LOC100131496 ZMYND8 EYA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100131496 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100131496 gene promoter:
  • CBF(2)
  • CBF-A
  • CBF-B
  • CP1A
  • HNF-4alpha1
  • HNF-4alpha2
  • NF-Y
  • NF-YA
  • NF-YB
  • TBP

Genomic Locations for LOC100131496 Gene

Genomic Locations for LOC100131496 Gene
chr20:47,318,502-47,320,754
(GRCh38/hg38)
Size:
2,253 bases
Orientation:
Plus strand
chr20:45,947,246-45,949,498
(GRCh37/hg19)
Size:
2,253 bases
Orientation:
Plus strand

Genomic View for LOC100131496 Gene

Genes around LOC100131496 on UCSC Golden Path with GeneCards custom track
LOC100131496 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100131496 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100131496 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100131496 Gene

Proteins for LOC100131496 Gene

Post-translational modifications for LOC100131496 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100131496 Gene

Domains & Families for LOC100131496 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100131496 Gene

Function for LOC100131496 Gene

Phenotypes From GWAS Catalog for LOC100131496 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100131496 Gene

Localization for LOC100131496 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100131496 Gene

Pathways & Interactions for LOC100131496 Gene

PathCards logo

SuperPathways for LOC100131496 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100131496 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100131496 Gene

Drugs & Compounds for LOC100131496 Gene

No Compound Related Data Available

Transcripts for LOC100131496 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100131496 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DDA6_9606 lncRNA 2253 3

RefSeq: NR_024594,

Ensembl: ENST00000599904 (view in UCSC) ,

LNCipedia: lnc-EYA2-3:1,

LOC100131496 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100131496 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100131496 Gene

No ASD Table

Relevant External Links for LOC100131496 Gene

GeneLoc Exon Structure for
LOC100131496

Expression for LOC100131496 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100131496 Gene

mRNA expression in normal human tissues for LOC100131496 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100131496

SOURCE GeneReport for Unigene cluster for LOC100131496 Gene:

Hs.662547
genes like me logo Genes that share expression patterns with LOC100131496: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100131496 Gene

Orthologs for LOC100131496 Gene

Evolution for LOC100131496 Gene

ENSEMBL:
Gene Tree for LOC100131496 (if available)
TreeFam:
Gene Tree for LOC100131496 (if available)

No data available for Orthologs for LOC100131496 Gene

Paralogs for LOC100131496 Gene

No data available for Paralogs for LOC100131496 Gene

Variants for LOC100131496 Gene

Additional dbSNP identifiers (rs#s) for LOC100131496 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100131496 Gene

Variant ID Type Subtype PubMed ID
esv33497 CNV loss 17666407
nsv1061899 CNV loss 25217958
nsv1066907 CNV gain 25217958

Variation tolerance for LOC100131496 Gene

Gene Damage Index Score: 3.49; 55.23% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Additional Variant Information for LOC100131496 Gene

Disorders for LOC100131496 Gene

Additional Disease Information for LOC100131496

No disorders were found for LOC100131496 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100131496 Gene

Publications for LOC100131496 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100131496 Gene

Products for LOC100131496 Gene

Sources for LOC100131496 Gene