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Aliases for LOC100131496 Gene
Subcategory (RNA class) for LOC100131496 Gene
lncRNA
Number of RNA Genes sources:
1 / 17
Aliases for LOC100131496 Gene
External Ids for LOC100131496 Gene
- Entrez Gene: 100131496
- Ensembl: ENSG00000267882
Previous GeneCards Identifiers for LOC100131496 Gene
- GC20U900374
- GC20P045381
- GC20P045948
Summaries for LOC100131496 Gene
GeneCards Summary for LOC100131496 Gene
LOC100131496 (Uncharacterized LOC100131496) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC100131496 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100131496 Gene
Genomics for LOC100131496 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC100131496 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH20J047313 | Promoter/Enhancer | 2.4 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.4 | +9.2 | 9179 | 28 | HNRNPL GATAD2A ATF7 TEAD4 PRDM10 ZNF629 REST TFE3 RFX1 LEF1 | ZMYND8 TP53RK SLC35C2 NCOA3 ENSG00000229853 RPL35AP RNU6-497P EYA2 LOC100131496 ENSG00000273451 | |
| GH20J047312 | Enhancer | 0.9 | ENCODE dbSUPER | 0.4 | -5.7 | -5710 | 1.2 | GATAD2A SOX13 RCOR2 RXRB ZBTB26 CTCF RBM22 TFDP1 NFXL1 CREM | ZMYND8 lnc-SULF2-10 LOC100131496 EYA2 | |
| GH20J047308 | Enhancer | 0.6 | ENCODE dbSUPER | 0.4 | -8.9 | -8902 | 2.3 | ZNF692 POLR2A RBM22 ZFP69B | lnc-SULF2-10 ZMYND8 LOC100131496 EYA2 | |
| GH20J047310 | Enhancer | 0.4 | dbSUPER | 0.4 | -7.2 | -7238 | 1 | RBM22 PRDM4 ZNF664 | lnc-SULF2-10 LOC100131496 ZMYND8 EYA2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100131496 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the LOC100131496 gene promoter:
-
- CBF(2)
- CBF-A
- CBF-B
- CP1A
- HNF-4alpha1
- HNF-4alpha2
- NF-Y
- NF-YA
- NF-YB
- TBP
Genomic Locations for LOC100131496 Gene
Genomic Locations for LOC100131496 Gene
- chr20:47,318,502-47,320,754
- (GRCh38/hg38)
- Size:
- 2,253 bases
- Orientation:
- Plus strand
- chr20:45,947,246-45,949,498
- (GRCh37/hg19)
- Size:
- 2,253 bases
- Orientation:
- Plus strand
Genomic View for LOC100131496 Gene
Genes around LOC100131496 on UCSC Golden Path with GeneCards custom track
LOC100131496 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 20q13.12 by Entrez Gene
- 20q13.12 by Ensembl
LOC100131496 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100131496 Gene
Proteins for LOC100131496 Gene
Post-translational modifications for LOC100131496 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100131496
- Origene Custom Protein Services for LOC100131496
No data available for DME Specific Peptides for LOC100131496 Gene
Domains & Families for LOC100131496 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100131496 Gene
Function for LOC100131496 Gene
Phenotypes From GWAS Catalog for LOC100131496 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100131496 Gene
Localization for LOC100131496 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100131496 Gene
Transcripts for LOC100131496 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100131496 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075DDA6_9606 | lncRNA | 2253 | 3 |
RefSeq: NR_024594, Ensembl: ENST00000599904 (view in UCSC) , LNCipedia: lnc-EYA2-3:1, |
LOC100131496 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC100131496 Gene
- 2 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC100131496 Gene
- GeneLoc Exon Structure for
- LOC100131496
Expression for LOC100131496 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100131496
SOURCE GeneReport for Unigene cluster for LOC100131496 Gene:
Hs.662547
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100131496 Gene
Orthologs for LOC100131496 Gene
No data available for Orthologs for LOC100131496 Gene
Paralogs for LOC100131496 Gene
No data available for Paralogs for LOC100131496 Gene
Variants for LOC100131496 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv33497 | CNV | loss | 17666407 |
| nsv1061899 | CNV | loss | 25217958 |
| nsv1066907 | CNV | gain | 25217958 |
Gene Damage Index Score:
3.49;
55.23% of all genes are more intolerant (likely to be disease-causing)
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Additional Variant Information for LOC100131496 Gene
Disorders for LOC100131496 Gene
Additional Disease Information for LOC100131496
No disorders were found for LOC100131496 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100131496 Gene
Publications for LOC100131496 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
No data available for Mastermind for LOC100131496 Gene
Products for LOC100131496 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100131496
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- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC100131496
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC100131496
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC100131496
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC100131496
Sources for LOC100131496 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB