Aliases for LOC100131496 Gene

Subcategory (RNA class) for LOC100131496 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100131496 Gene

  • Uncharacterized LOC100131496 3
  • Novel Transcript, Antisense To ZMYND8 5
  • AL031666.2 5
  • Lnc-EYA2-3 170

External Ids for LOC100131496 Gene

Previous GeneCards Identifiers for LOC100131496 Gene

  • GC20U900374
  • GC20P045381
  • GC20P045948

Summaries for LOC100131496 Gene

GeneCards Summary for LOC100131496 Gene

LOC100131496 (Uncharacterized LOC100131496) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100131496 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100131496 Gene

Genomics for LOC100131496 Gene

GeneHancer (GH) Regulatory Elements for LOC100131496 Gene

Promoters and enhancers for LOC100131496 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100131496 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100131496 gene promoter:
  • CBF(2)
  • CBF-A
  • CBF-B
  • CP1A
  • HNF-4alpha1
  • HNF-4alpha2
  • NF-Y
  • NF-YA
  • NF-YB
  • TBP

Genomic Locations for LOC100131496 Gene

Genomic Locations for LOC100131496 Gene
chr20:47,318,502-47,320,754
(GRCh38/hg38)
Size:
2,253 bases
Orientation:
Plus strand
chr20:45,947,246-45,949,498
(GRCh37/hg19)
Size:
2,253 bases
Orientation:
Plus strand

Genomic View for LOC100131496 Gene

Genes around LOC100131496 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100131496 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100131496 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100131496 Gene

Proteins for LOC100131496 Gene

Post-translational modifications for LOC100131496 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100131496 Gene

Domains & Families for LOC100131496 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100131496 Gene

Function for LOC100131496 Gene

Phenotypes From GWAS Catalog for LOC100131496 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100131496 Gene

Localization for LOC100131496 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100131496 Gene

Pathways & Interactions for LOC100131496 Gene

PathCards logo

SuperPathways for LOC100131496 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100131496 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100131496 Gene

Drugs & Compounds for LOC100131496 Gene

No Compound Related Data Available

Transcripts for LOC100131496 Gene

mRNA/cDNA for LOC100131496 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100131496 Gene

No ASD Table

Relevant External Links for LOC100131496 Gene

GeneLoc Exon Structure for
LOC100131496

Expression for LOC100131496 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100131496 Gene

mRNA expression in normal human tissues for LOC100131496 Gene

SOURCE GeneReport for Unigene cluster for LOC100131496 Gene:

Hs.662547
genes like me logo Genes that share expression patterns with LOC100131496: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100131496 Gene

Orthologs for LOC100131496 Gene

Evolution for LOC100131496 Gene

ENSEMBL:
Gene Tree for LOC100131496 (if available)
TreeFam:
Gene Tree for LOC100131496 (if available)

No data available for Orthologs for LOC100131496 Gene

Paralogs for LOC100131496 Gene

No data available for Paralogs for LOC100131496 Gene

Variants for LOC100131496 Gene

Sequence variations from dbSNP and Humsavar for LOC100131496 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000350134 -- 47,317,515(+) C/T upstream_transcript_variant
rs1001228484 -- 47,317,890(+) G/A upstream_transcript_variant
rs1001313723 -- 47,321,181(+) G/A downstream_transcript_variant
rs1001367096 -- 47,318,858(+) T/C non_coding_transcript_variant
rs1001430744 -- 47,318,281(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100131496 Gene

Variant ID Type Subtype PubMed ID
esv33497 CNV loss 17666407
nsv1061899 CNV loss 25217958
nsv1066907 CNV gain 25217958

Variation tolerance for LOC100131496 Gene

Gene Damage Index Score: 3.49; 55.23% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Additional Variant Information for LOC100131496 Gene

Disorders for LOC100131496 Gene

No disorders were found for LOC100131496 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100131496 Gene

Publications for LOC100131496 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LOC100131496 Gene

Products for LOC100131496 Gene

Sources for LOC100131496 Gene