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Aliases for LOC100131289 Gene
Subcategory (RNA class) for LOC100131289 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LOC100131289 Gene
External Ids for LOC100131289 Gene
- Entrez Gene: 100131289
Previous GeneCards Identifiers for LOC100131289 Gene
- GC06U901326
- GC06P027838
- GC06P027729
- GC06P027830
- GC06P028107
Summaries for LOC100131289 Gene
GeneCards Summary for LOC100131289 Gene
LOC100131289 (Uncharacterized LOC100131289) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC100131289 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100131289 Gene
Genomics for LOC100131289 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC100131289 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH06J027756 | Promoter/Enhancer | 1 | ENCODE CraniofacialAtlas | 600.7 | -0.1 | -87 | 1 | POLR2A BACH1 LARP7 ZNF143 IKZF2 DPF2 RELB EGR1 GATAD2B ELF1 | LOC100131289 H2BC13 RNU6-471P ZNF391 TRV-AAC1-5 RF00017-5387 ZNF184 | |
| GH06J027758 | Enhancer | 0.4 | CraniofacialAtlas | 600.7 | +1.0 | 1003 | 0.4 | TRIM25 ZNF507 PRDM10 | ENSG00000287252 LOC100131289 ZSCAN12 ZKSCAN8 ZSCAN23 ZSCAN9 GUSBP2 ZKSCAN3 H2BC13 RNU6-471P | |
| GH06J027762 | Promoter/Enhancer | 0.8 | ENCODE CraniofacialAtlas | 0.4 | +5.0 | 5040 | 0.9 | POLR2A YY1 ZBTB33 TAF1 TBP EZH2 | ZNF603P H4C10P H2AC13 H2BC13 RNU6-471P ENSG00000287252 LOC100131289 piR-40163-092 RF00017-5387 ZNF184 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100131289 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC100131289 Gene
Genomic Locations for LOC100131289 Gene
- chr6:27,757,419-27,763,293
- (GRCh38/hg38)
- Size:
- 5,875 bases
- Orientation:
- Plus strand
- chr6:27,729,523-27,730,966
- (GRCh37/hg19)
- Size:
- 1,444 bases
- Orientation:
- Plus strand
Genomic View for LOC100131289 Gene
Genes around LOC100131289 on UCSC Golden Path with GeneCards custom track
LOC100131289 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 6p22.1 by Entrez Gene
LOC100131289 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100131289 Gene
Proteins for LOC100131289 Gene
Post-translational modifications for LOC100131289 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100131289
- Origene Custom Protein Services for LOC100131289
No data available for DME Specific Peptides for LOC100131289 Gene
Domains & Families for LOC100131289 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100131289 Gene
Function for LOC100131289 Gene
Phenotypes From GWAS Catalog for LOC100131289 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100131289 Gene
Localization for LOC100131289 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100131289 Gene
Transcripts for LOC100131289 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100131289 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075C1FA_9606 | lncRNA | 828 | 4 |
RefSeq: NR_038929, LncBook: HSALNT0103169, LNCipedia: lnc-HIST1H2AI-1:5, NONCODE: NONHSAT108404.2, |
| URS00008B2FBE_9606 | lncRNA | 1514 | 3 |
LncBook: HSALNT0103168, LNCipedia: lnc-HIST1H2AI-1:3, NONCODE: NONHSAT108403.2, |
| URS00008BB130_9606 | lncRNA | 1475 | 3 |
LncBook: HSALNT0103167, LNCipedia: lnc-HIST1H2AI-1:2, NONCODE: NONHSAT108402.2, |
| URS00008C3767_9606 | lncRNA | 1291 | 3 |
LncBook: HSALNT0103161, LNCipedia: lnc-HIST1H2AI-1:1, NONCODE: NONHSAT108401.2, |
| URS0000D5B93B_9606 | lncRNA | 1865 | 2 |
LncBook: HSALNT0103157, LNCipedia: lnc-HIST1H2AI-1:7, |
LOC100131289 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC100131289 Gene
- 2 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC100131289 Gene
- GeneLoc Exon Structure for
- LOC100131289
Expression for LOC100131289 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100131289
SOURCE GeneReport for Unigene cluster for LOC100131289 Gene:
Hs.200573
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100131289 Gene
Orthologs for LOC100131289 Gene
No data available for Orthologs and Evolution for LOC100131289 Gene
Paralogs for LOC100131289 Gene
No data available for Paralogs for LOC100131289 Gene
Variants for LOC100131289 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100131289 Gene
Disorders for LOC100131289 Gene
No disorders were found for LOC100131289 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100131289 Gene
Publications for LOC100131289 Gene
No publications were found for LOC100131289 Gene.
No data available for Mastermind for LOC100131289 Gene
Products for LOC100131289 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100131289
- Origene Custom Protein Services for LOC100131289
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- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC100131289
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC100131289
- Browse Sino Biological cDNA Clones
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC100131289
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC100131289
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC100131289
Sources for LOC100131289 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB