Aliases for LOC100131289 Gene

Subcategory (RNA class) for LOC100131289 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100131289 Gene

  • Uncharacterized LOC100131289 3
  • Lnc-HIST1H2AI-1 165
  • NONHSAG043291.2 91
  • HSALNG0048904 164

External Ids for LOC100131289 Gene

Previous GeneCards Identifiers for LOC100131289 Gene

  • GC06U901326
  • GC06P027838
  • GC06P027729
  • GC06P027830
  • GC06P028107

Summaries for LOC100131289 Gene

GeneCards Summary for LOC100131289 Gene

LOC100131289 (Uncharacterized LOC100131289) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100131289 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100131289 Gene

Genomics for LOC100131289 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100131289 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J027756 Promoter/Enhancer 1 ENCODE CraniofacialAtlas 600.7 -0.1 -87 1 POLR2A BACH1 LARP7 ZNF143 IKZF2 DPF2 RELB EGR1 GATAD2B ELF1 LOC100131289 H2BC13 RNU6-471P ZNF391 TRV-AAC1-5 RF00017-5387 ZNF184
GH06J027758 Enhancer 0.4 CraniofacialAtlas 600.7 +1.0 1003 0.4 TRIM25 ZNF507 PRDM10 ENSG00000287252 LOC100131289 ZSCAN12 ZKSCAN8 ZSCAN23 ZSCAN9 GUSBP2 ZKSCAN3 H2BC13 RNU6-471P
GH06J027762 Promoter/Enhancer 0.8 ENCODE CraniofacialAtlas 0.4 +5.0 5040 0.9 POLR2A YY1 ZBTB33 TAF1 TBP EZH2 ZNF603P H4C10P H2AC13 H2BC13 RNU6-471P ENSG00000287252 LOC100131289 piR-40163-092 RF00017-5387 ZNF184
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100131289 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100131289 Gene

Genomic Locations for LOC100131289 Gene
chr6:27,757,419-27,763,293
(GRCh38/hg38)
Size:
5,875 bases
Orientation:
Plus strand
chr6:27,729,523-27,730,966
(GRCh37/hg19)
Size:
1,444 bases
Orientation:
Plus strand

Genomic View for LOC100131289 Gene

Genes around LOC100131289 on UCSC Golden Path with GeneCards custom track
LOC100131289 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100131289 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100131289 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100131289 Gene

Proteins for LOC100131289 Gene

Post-translational modifications for LOC100131289 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100131289 Gene

Domains & Families for LOC100131289 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100131289 Gene

Function for LOC100131289 Gene

Phenotypes From GWAS Catalog for LOC100131289 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100131289 Gene

Localization for LOC100131289 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100131289 Gene

Pathways & Interactions for LOC100131289 Gene

PathCards logo

SuperPathways for LOC100131289 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100131289 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100131289 Gene

Drugs & Compounds for LOC100131289 Gene

No Compound Related Data Available

Transcripts for LOC100131289 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100131289 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C1FA_9606 lncRNA 828 4

RefSeq: NR_038929,

LncBook: HSALNT0103169,

LNCipedia: lnc-HIST1H2AI-1:5,

NONCODE: NONHSAT108404.2,

URS00008B2FBE_9606 lncRNA 1514 3

LncBook: HSALNT0103168,

LNCipedia: lnc-HIST1H2AI-1:3,

NONCODE: NONHSAT108403.2,

URS00008BB130_9606 lncRNA 1475 3

LncBook: HSALNT0103167,

LNCipedia: lnc-HIST1H2AI-1:2,

NONCODE: NONHSAT108402.2,

URS00008C3767_9606 lncRNA 1291 3

LncBook: HSALNT0103161,

LNCipedia: lnc-HIST1H2AI-1:1,

NONCODE: NONHSAT108401.2,

URS0000D5B93B_9606 lncRNA 1865 2

LncBook: HSALNT0103157,

LNCipedia: lnc-HIST1H2AI-1:7,

LOC100131289 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100131289 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100131289 Gene

No ASD Table

Relevant External Links for LOC100131289 Gene

GeneLoc Exon Structure for
LOC100131289

Expression for LOC100131289 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100131289

SOURCE GeneReport for Unigene cluster for LOC100131289 Gene:

Hs.200573
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100131289 Gene

Orthologs for LOC100131289 Gene

No data available for Orthologs and Evolution for LOC100131289 Gene

Paralogs for LOC100131289 Gene

No data available for Paralogs for LOC100131289 Gene

Variants for LOC100131289 Gene

Additional dbSNP identifiers (rs#s) for LOC100131289 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100131289 Gene

Variant ID Type Subtype PubMed ID
nsv601205 CNV gain 21841781
nsv830618 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100131289 Gene

Disorders for LOC100131289 Gene

No disorders were found for LOC100131289 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100131289 Gene

Publications for LOC100131289 Gene

No publications were found for LOC100131289 Gene.

No data available for Mastermind for LOC100131289 Gene

Products for LOC100131289 Gene

Sources for LOC100131289 Gene