Aliases for LOC100130992 Gene

Subcategory (RNA class) for LOC100130992 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC100130992 Gene

  • Uncharacterized LOC100130992 3
  • NONHSAG005387 92
  • HSALNG0076631 167
  • Lnc-COMMD3-1 168

External Ids for LOC100130992 Gene

Previous GeneCards Identifiers for LOC100130992 Gene

  • GC10U900891
  • GC10P022581

Summaries for LOC100130992 Gene

GeneCards Summary for LOC100130992 Gene

LOC100130992 (Uncharacterized LOC100130992) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100130992 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100130992 Gene

Genomics for LOC100130992 Gene

GeneHancer (GH) Regulatory Elements for LOC100130992 Gene

Promoters and enhancers for LOC100130992 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J022250 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.2 1171 5.1 ZNF217 ZFX ZNF10 EP300 POLR2A ZBTB10 CLOCK ZNF623 ZBTB26 TRIM22 ENSG00000279631 LOC100130992 lnc-EBLN1-1 MLLT10 BMI1 ENSG00000261671 COMMD3 HNRNPRP1 MIR1915 MIR1915HG
GH10J022246 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 -4.7 -4691 3.4 ZSCAN5C TCF12 JUND TEAD4 ZNF639 EP300 CTBP1 OSR2 LEF1 ZNF132 COMMD3 BMI1 ENSG00000261671 MIR1915 MIR1915HG LOC100130992 lnc-EBLN1-1 ENSG00000286832 LOC105376447
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100130992 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130992 gene promoter:
  • C/EBPalpha
  • C/EBPbeta
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • GATA-1
  • Pbx1a

Genomic Locations for LOC100130992 Gene

Genomic Locations for LOC100130992 Gene
chr10:22,251,791-22,258,548
(GRCh38/hg38)
Size:
6,758 bases
Orientation:
Plus strand
chr10:22,541,001-22,547,477
(GRCh37/hg19)
Size:
6,477 bases
Orientation:
Plus strand

Genomic View for LOC100130992 Gene

Genes around LOC100130992 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130992 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130992 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130992 Gene

Proteins for LOC100130992 Gene

Post-translational modifications for LOC100130992 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130992 Gene

Domains & Families for LOC100130992 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100130992 Gene

Function for LOC100130992 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130992 Gene

Localization for LOC100130992 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130992 Gene

Pathways & Interactions for LOC100130992 Gene

PathCards logo

SuperPathways for LOC100130992 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100130992 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100130992 Gene

Drugs & Compounds for LOC100130992 Gene

No Compound Related Data Available

Transcripts for LOC100130992 Gene

mRNA/cDNA for LOC100130992 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 NONCODE transcripts :
1 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130992 Gene

No ASD Table

Relevant External Links for LOC100130992 Gene

GeneLoc Exon Structure for
LOC100130992

Expression for LOC100130992 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100130992 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x5.6), Brain - Caudate (basal ganglia) (x5.1), and Brain - Putamen (basal ganglia) (x4.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100130992

SOURCE GeneReport for Unigene cluster for LOC100130992 Gene:

Hs.48501

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130992 Gene

Orthologs for LOC100130992 Gene

No data available for Orthologs and Evolution for LOC100130992 Gene

Paralogs for LOC100130992 Gene

No data available for Paralogs for LOC100130992 Gene

Variants for LOC100130992 Gene

Additional dbSNP identifiers (rs#s) for LOC100130992 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130992 Gene

Disorders for LOC100130992 Gene

No disorders were found for LOC100130992 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100130992 Gene

Publications for LOC100130992 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LOC100130992 Gene

Products for LOC100130992 Gene

Sources for LOC100130992 Gene