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Aliases for LOC100130950 Gene

Subcategory (RNA class) for LOC100130950 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100130950 Gene

  • Uncharacterized LOC100130950 3
  • AC087500.1 5

External Ids for LOC100130950 Gene

Previous GeneCards Identifiers for LOC100130950 Gene

  • GC17U900924
  • GC17P005038
  • GC17P005096

Summaries for LOC100130950 Gene

GeneCards Summary for LOC100130950 Gene

LOC100130950 (Uncharacterized LOC100130950) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100130950 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130950 Gene

Genomics for LOC100130950 Gene

GeneHancer (GH) Regulatory Elements for LOC100130950 Gene

Promoters and enhancers for LOC100130950 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J005191 Promoter/Enhancer 1.6 Ensembl ENCODE 681.2 -0.2 -183 1.8 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 POLR2B ZNF213 ZNF594 LOC100130950 LOC101927979 ZNF232 MIS12 RPAIN ANKFY1 DERL2 DHX33 PELP1
GH17J004937 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 25.5 -247.1 -247067 14.4 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 E2F8 ZNF143 SP3 NFYC ENO3 RNF167 PFN1 SLC25A11 ZNF232 SPAG7 CHRNE LOC100130950 CAMTA2 RPAIN
GH17J005110 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 25.7 -80.1 -80110 2.1 HDGF MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 LOC101928000 ZNF232 ANKFY1 LOC100130950 RPAIN DHX33 DERL2 ENSG00000263272 ZNF594 ENSG00000263220
GH17J004985 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 24.9 -204.5 -204495 3.7 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 YY1 CAMTA2 ENSG00000262678 LOC101927979 ZNF594 LOC100130950 CHRNE ZNF232 DERL2 NUP88 MIS12
GH17J004262 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 24.2 -928.4 -928387 2.3 HDGF PKNOX1 CLOCK ARID4B NEUROD1 SIN3A DMAP1 YY1 SLC30A9 POLR2B ANKFY1 ZNF232 LOC101927979 LOC100130950 ZNF594 LOC105371492 ENSG00000263164 MYBBP1A CYB5D2 RYKP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100130950 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130950 Gene

Genomic Locations for LOC100130950 Gene
chr17:5,192,084-5,248,069
(GRCh38/hg38)
Size:
55,986 bases
Orientation:
Plus strand
chr17:5,095,379-5,151,364
(GRCh37/hg19)
Size:
55,986 bases
Orientation:
Plus strand

Genomic View for LOC100130950 Gene

Genes around LOC100130950 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130950 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130950 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130950 Gene

Proteins for LOC100130950 Gene

Post-translational modifications for LOC100130950 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130950 Gene

Domains & Families for LOC100130950 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130950 Gene

Function for LOC100130950 Gene

Phenotypes From GWAS Catalog for LOC100130950 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130950 Gene

Localization for LOC100130950 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130950 Gene

Pathways & Interactions for LOC100130950 Gene

SuperPathways for LOC100130950 Gene

No Data Available

Interacting Proteins for LOC100130950 Gene

Gene Ontology (GO) - Biological Process for LOC100130950 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130950 Gene

Drugs & Compounds for LOC100130950 Gene

No Compound Related Data Available

Transcripts for LOC100130950 Gene

mRNA/cDNA for LOC100130950 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Unigene Clusters for LOC100130950 Gene

Uncharacterized LOC100130950:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130950 Gene

No ASD Table

Relevant External Links for LOC100130950 Gene

GeneLoc Exon Structure for
LOC100130950

Expression for LOC100130950 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130950 Gene

SOURCE GeneReport for Unigene cluster for LOC100130950 Gene:

Hs.668646
genes like me logo Genes that share expression patterns with LOC100130950: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130950 Gene

Orthologs for LOC100130950 Gene

Evolution for LOC100130950 Gene

ENSEMBL:
Gene Tree for LOC100130950 (if available)
TreeFam:
Gene Tree for LOC100130950 (if available)

No data available for Orthologs for LOC100130950 Gene

Paralogs for LOC100130950 Gene

No data available for Paralogs for LOC100130950 Gene

Variants for LOC100130950 Gene

Sequence variations from dbSNP and Humsavar for LOC100130950 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000043055 -- 5,197,863(+) A/C intron_variant
rs1000164150 -- 5,204,804(+) A/ACA intron_variant
rs1000372428 -- 5,210,262(+) T/A intron_variant
rs1000374401 -- 5,232,037(+) C/A intron_variant
rs1000471323 -- 5,191,959(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100130950 Gene

Variant ID Type Subtype PubMed ID
dgv3089n100 CNV gain 25217958
esv1669585 CNV insertion 17803354
esv3302906 CNV tandem duplication 20981092
esv6556 CNV gain 19470904
nsv1111145 CNV tandem duplication 24896259
nsv1142211 CNV tandem duplication 24896259
nsv574273 CNV gain 21841781
nsv952114 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100130950 Gene

Disorders for LOC100130950 Gene

Additional Disease Information for LOC100130950

No disorders were found for LOC100130950 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130950 Gene

Publications for LOC100130950 Gene

  1. Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease. (PMID: 24162737) Lambert JC … Amouyel P (Nature genetics 2013) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC100130950 Gene

Sources for LOC100130950 Gene

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