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Aliases for LOC100130872 Gene

Subcategory (RNA class) for LOC100130872 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC100130872 Gene

  • Uncharacterized LOC100130872 3

External Ids for LOC100130872 Gene

Previous GeneCards Identifiers for LOC100130872 Gene

  • GC04M001185
  • GC04M001186
  • GC04M001187
  • GC04M001188
  • GC04M001190
  • GC04U901407
  • GC04M001196
  • GC04M001197
  • GC04M001199
  • GC04M001201
  • GC04M001202
  • GC04M001203
  • GC04M001204
  • GC04M001206

Summaries for LOC100130872 Gene

GeneCards Summary for LOC100130872 Gene

LOC100130872 (Uncharacterized LOC100130872) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100130872 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130872 Gene

Genomics for LOC100130872 Gene

GeneHancer (GH) Regulatory Elements for LOC100130872 Gene

Promoters and enhancers for LOC100130872 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I001197 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 0.8 +4.3 4312 13.8 HDGF PKNOX1 SMAD1 MLX ZFP64 ARID4B DMAP1 IRF4 YY1 SLC30A9 SPON2 CRIPAK CTBP1-AS2 UVSSA CTBP1 MAEA RNF212 ENSG00000273179 LOC100130872 LOC101928548
GH04I001191 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +15.2 15201 5 RAD21 YY1 GLIS2 FOS ATF7 RXRA USF2 REST NR2F2 ZFP69B CTBP1-AS2 CRIPAK UVSSA CTBP1 MAEA RNF212 SLC26A1 FGFRL1 ENSG00000270195 LOC101928548
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130872 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130872 gene promoter:

Genomic Locations for LOC100130872 Gene

Genomic Locations for LOC100130872 Gene
chr4:1,195,783-1,208,962
(GRCh38/hg38)
Size:
13,180 bases
Orientation:
Minus strand
chr4:1,189,571-1,202,750
(GRCh37/hg19)

Genomic View for LOC100130872 Gene

Genes around LOC100130872 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130872 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130872 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130872 Gene

Proteins for LOC100130872 Gene

Post-translational modifications for LOC100130872 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130872 Gene

Domains & Families for LOC100130872 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130872 Gene

Function for LOC100130872 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130872 Gene

Localization for LOC100130872 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130872 Gene

Pathways & Interactions for LOC100130872 Gene

SuperPathways for LOC100130872 Gene

No Data Available

Interacting Proteins for LOC100130872 Gene

Gene Ontology (GO) - Biological Process for LOC100130872 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130872 Gene

Drugs & Compounds for LOC100130872 Gene

No Compound Related Data Available

Transcripts for LOC100130872 Gene

mRNA/cDNA for LOC100130872 Gene

(11) Additional mRNA sequences :

Unigene Clusters for LOC100130872 Gene

Uncharacterized LOC100130872:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130872 Gene

No ASD Table

Relevant External Links for LOC100130872 Gene

GeneLoc Exon Structure for
LOC100130872

Expression for LOC100130872 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130872 Gene

SOURCE GeneReport for Unigene cluster for LOC100130872 Gene:

Hs.302963
genes like me logo Genes that share expression patterns with LOC100130872: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130872 Gene

Orthologs for LOC100130872 Gene

No data available for Orthologs and Evolution for LOC100130872 Gene

Paralogs for LOC100130872 Gene

No data available for Paralogs for LOC100130872 Gene

Variants for LOC100130872 Gene

Sequence variations from dbSNP and Humsavar for LOC100130872 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000124113 -- 1,203,125(-) G/A intron_variant
rs1000437332 -- 1,201,651(-) C/T intron_variant
rs1000470940 -- 1,209,602(-) C/T upstream_transcript_variant
rs1000489498 -- 1,201,776(-) G/A intron_variant
rs1000580979 -- 1,205,559(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100130872 Gene

Variant ID Type Subtype PubMed ID
dgv636n27 CNV loss 19166990
dgv8890n54 CNV loss 21841781
dgv8891n54 CNV loss 21841781
esv2726768 CNV deletion 23290073
nsv1074662 CNV deletion 25765185
nsv475579 CNV novel sequence insertion 20440878
nsv508988 CNV insertion 20534489
nsv593278 CNV loss 21841781
nsv822425 CNV loss 20364138
nsv829835 CNV gain 17160897
nsv950331 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100130872 Gene

Disorders for LOC100130872 Gene

Additional Disease Information for LOC100130872

No disorders were found for LOC100130872 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130872 Gene

Publications for LOC100130872 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC100130872 Gene

Sources for LOC100130872 Gene

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