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Aliases for LOC100130612 Gene

Aliases for LOC100130612 Gene

  • TAF9 RNA Polymerase II, TATA Box Binding Protein (TBP)-Associated Factor, 32kDa Pseudogene 3

External Ids for LOC100130612 Gene

Previous GeneCards Identifiers for LOC100130612 Gene

  • GC08U900930
  • GC08P027751

Summaries for LOC100130612 Gene

GeneCards Summary for LOC100130612 Gene

LOC100130612 (TAF9 RNA Polymerase II, TATA Box Binding Protein (TBP)-Associated Factor, 32kDa Pseudogene) is a Pseudogene.

Additional gene information for LOC100130612 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130612 Gene

Genomics for LOC100130612 Gene

GeneHancer (GH) Regulatory Elements for LOC100130612 Gene

Promoters and enhancers for LOC100130612 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J027835 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 600.7 -1.1 -1120 3.2 MTA3 SP1 ZFX CC2D1A NKRF MLLT1 CEBPG RERE ZNF384 ZNF687 PBK LOC100130612 ENSG00000253176 CCDC25 ESCO2 RNU6-1276P
GH08J027839 Promoter 1.1 Ensembl 600.7 +1.0 1004 0.2 ZNF148 MLLT1 BACH1 SMARCA4 RFX1 ATF1 GTF2E2 LEF1 HDAC1 POLR2A PBK LOC100130612 ENSG00000253176 ESCO2 MIR4287
GH08J027838 Enhancer 0.6 ENCODE 600.7 +0.6 562 0.2 BACH1 ZNF639 RFX1 PKNOX1 EP300 ZBTB11 GABPA BMI1 NR2C2 FOSL1 ENSG00000253176 PBK LOC100130612 MIR4287
GH08J027871 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +34.9 34905 3.6 ZNF121 CEBPG ZSCAN21 NCOA3 MAFK SP7 ELF1 SP5 MZF1 ZNF547 CCDC25 SCARA3 PBK ELP3 MIR4287 LOC100130612 SCARA5
GH08J027841 Enhancer 0.6 Ensembl 0.7 +3.3 3303 1.6 ZSCAN4 CTBP1 NBN JUNB BATF CEBPB BRD4 ZNF664 TEAD4 CBFA2T3 CCDC25 ESCO2 CLU SCARA3 LOC100130612 MIR4287
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100130612 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130612 Gene

Genomic Locations for LOC100130612 Gene
chr8:27,838,497-27,840,412
(GRCh38/hg38)
Size:
1,916 bases
Orientation:
Plus strand
chr8:27,695,994-27,697,929
(GRCh37/hg19)
Size:
1,936 bases
Orientation:
Plus strand

Genomic View for LOC100130612 Gene

Genes around LOC100130612 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130612 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130612 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130612 Gene

Proteins for LOC100130612 Gene

Post-translational modifications for LOC100130612 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130612 Gene

Domains & Families for LOC100130612 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130612 Gene

Function for LOC100130612 Gene

Phenotypes From GWAS Catalog for LOC100130612 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130612 Gene

Localization for LOC100130612 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130612 Gene

Pathways & Interactions for LOC100130612 Gene

PathCards logo

SuperPathways for LOC100130612 Gene

No Data Available

Interacting Proteins for LOC100130612 Gene

Gene Ontology (GO) - Biological Process for LOC100130612 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130612 Gene

Drugs & Compounds for LOC100130612 Gene

No Compound Related Data Available

Transcripts for LOC100130612 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130612 Gene

No ASD Table

Relevant External Links for LOC100130612 Gene

GeneLoc Exon Structure for
LOC100130612

No data available for mRNA/cDNA for LOC100130612 Gene

Expression for LOC100130612 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130612 Gene

genes like me logo Genes that share expression patterns with LOC100130612: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130612 Gene

Orthologs for LOC100130612 Gene

No data available for Orthologs and Evolution for LOC100130612 Gene

Paralogs for LOC100130612 Gene

No data available for Paralogs for LOC100130612 Gene

Variants for LOC100130612 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130612 Gene

Disorders for LOC100130612 Gene

No disorders were found for LOC100130612 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100130612 Gene

Publications for LOC100130612 Gene

No publications were found for LOC100130612 Gene.

No data available for External Links for LOC100130612 Gene

Products for LOC100130612 Gene

Sources for LOC100130612 Gene

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