Aliases for LOC100130612 Gene

Aliases for LOC100130612 Gene

  • TAF9 RNA Polymerase II, TATA Box Binding Protein (TBP)-Associated Factor, 32kDa Pseudogene 3

External Ids for LOC100130612 Gene

Previous GeneCards Identifiers for LOC100130612 Gene

  • GC08U900930
  • GC08P027751

Summaries for LOC100130612 Gene

GeneCards Summary for LOC100130612 Gene

LOC100130612 (TAF9 RNA Polymerase II, TATA Box Binding Protein (TBP)-Associated Factor, 32kDa Pseudogene) is a Pseudogene.

Additional gene information for LOC100130612 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100130612 Gene

Genomics for LOC100130612 Gene

GeneHancer (GH) Regulatory Elements for LOC100130612 Gene

Promoters and enhancers for LOC100130612 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J027835 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 750.6 -1.0 -1030 3.3 SIN3A SP1 ZBTB40 ZBTB6 MLX RBPJ HDAC2 NR2F6 ATF1 CREB1 PBK ENSG00000253176 LOC100130612 lnc-ESCO2-3 piR-50443-355 ESCO2 CCDC25 RF00017-6909
GH08J027855 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +18.0 18014 1.4 CTCF RAD21 CEBPG CEBPA REST ZNF512 RFX5 ZNF580 SMC3 CHAMP1 CCDC25 SCARA5 NUGGC HSALNG0064210 LOC100130612 RF00017-6909
GH08J027854 Enhancer 0.6 Ensembl 0.4 +16.7 16704 0.8 CTCF RAD21 CEBPG CEBPA REST CEBPB RFX5 ZNF580 SMC3 CHAMP1 CCDC25 ESCO2 HSALNG0064210 LOC100130612 RF00017-6909
GH08J027841 Enhancer 0.2 Ensembl 0.6 +3.6 3604 0.6 CCDC25 LOC100130612 HSALNG0064210 RF00017-6909
GH08J027853 Enhancer 0.2 ENCODE 0.4 +15.5 15530 1.2 CCDC25 HSALNG0064210 LOC100130612 RF00017-6909
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100130612 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130612 Gene

Genomic Locations for LOC100130612 Gene
chr8:27,838,497-27,840,412
(GRCh38/hg38)
Size:
1,916 bases
Orientation:
Plus strand
chr8:27,695,994-27,697,929
(GRCh37/hg19)
Size:
1,936 bases
Orientation:
Plus strand

Genomic View for LOC100130612 Gene

Genes around LOC100130612 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130612 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130612 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130612 Gene

Proteins for LOC100130612 Gene

Post-translational modifications for LOC100130612 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130612 Gene

Domains & Families for LOC100130612 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100130612 Gene

Function for LOC100130612 Gene

Phenotypes From GWAS Catalog for LOC100130612 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130612 Gene

Localization for LOC100130612 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130612 Gene

Pathways & Interactions for LOC100130612 Gene

PathCards logo

SuperPathways for LOC100130612 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100130612 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130612 Gene

Drugs & Compounds for LOC100130612 Gene

No Compound Related Data Available

Transcripts for LOC100130612 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130612 Gene

No ASD Table

Relevant External Links for LOC100130612 Gene

GeneLoc Exon Structure for
LOC100130612

No data available for mRNA/cDNA for LOC100130612 Gene

Expression for LOC100130612 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130612 Gene

genes like me logo Genes that share expression patterns with LOC100130612: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130612 Gene

Orthologs for LOC100130612 Gene

No data available for Orthologs and Evolution for LOC100130612 Gene

Paralogs for LOC100130612 Gene

No data available for Paralogs for LOC100130612 Gene

Variants for LOC100130612 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130612 Gene

Disorders for LOC100130612 Gene

No disorders were found for LOC100130612 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100130612 Gene

Publications for LOC100130612 Gene

No publications were found for LOC100130612 Gene.

No data available for External Links for LOC100130612 Gene

Products for LOC100130612 Gene

Sources for LOC100130612 Gene