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Aliases for LOC100130476 Gene

Subcategory (RNA class) for LOC100130476 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100130476 Gene

  • Uncharacterized LOC100130476 3
  • AL357060.2 5

External Ids for LOC100130476 Gene

Previous GeneCards Identifiers for LOC100130476 Gene

  • GC06U901331
  • GC06M138228
  • GC06M138180

Summaries for LOC100130476 Gene

GeneCards Summary for LOC100130476 Gene

LOC100130476 (Uncharacterized LOC100130476) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100130476 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130476 Gene

Genomics for LOC100130476 Gene

GeneHancer (GH) Regulatory Elements for LOC100130476 Gene

Promoters and enhancers for LOC100130476 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I137861 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 -0.2 -190 14.1 MLX YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 TNFAIP3 LOC100130476 GC06M137884
GH06I137819 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 39.5 +45.6 45595 6.4 PKNOX1 ATF1 NEUROD1 BMI1 RFX5 ZNF335 ZNF366 SCRT2 ZNF350 FOS LOC100130476 TNFAIP3 ENSG00000207300
GH06I137810 Enhancer 2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 17.2 +56.0 56045 3.7 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B DMAP1 SLC30A9 POLR2B TNFAIP3 LOC100130476 ENSG00000207300
GH06I137826 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 18.9 +38.1 38103 6.4 HDGF PKNOX1 SMAD1 YBX1 TCF12 FOS ATF7 RUNX3 JUNB ZNF592 TNFAIP3 LOC100130476 OLIG3 ENSG00000207300
GH06I137807 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 19.1 +59.5 59499 2.5 HDGF ELF3 FOXA2 MLX ARID4B YBX1 RAD21 ZNF48 RARA FOS TNFAIP3 LOC100130476 ENSG00000207300
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130476 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130476 Gene

Genomic Locations for LOC100130476 Gene
chr6:137,823,669-137,868,233
(GRCh38/hg38)
Size:
44,565 bases
Orientation:
Minus strand
chr6:138,144,810-138,189,370
(GRCh37/hg19)

Genomic View for LOC100130476 Gene

Genes around LOC100130476 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130476 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130476 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130476 Gene

Proteins for LOC100130476 Gene

Post-translational modifications for LOC100130476 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130476 Gene

Domains & Families for LOC100130476 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130476 Gene

Function for LOC100130476 Gene

Phenotypes From GWAS Catalog for LOC100130476 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130476 Gene

Localization for LOC100130476 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130476 Gene

Pathways & Interactions for LOC100130476 Gene

SuperPathways for LOC100130476 Gene

No Data Available

Interacting Proteins for LOC100130476 Gene

Gene Ontology (GO) - Biological Process for LOC100130476 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130476 Gene

Drugs & Compounds for LOC100130476 Gene

No Compound Related Data Available

Transcripts for LOC100130476 Gene

mRNA/cDNA for LOC100130476 Gene

(2) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100130476 Gene

Uncharacterized LOC100130476:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130476 Gene

No ASD Table

Relevant External Links for LOC100130476 Gene

GeneLoc Exon Structure for
LOC100130476

Expression for LOC100130476 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130476 Gene

SOURCE GeneReport for Unigene cluster for LOC100130476 Gene:

Hs.598050
genes like me logo Genes that share expression patterns with LOC100130476: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130476 Gene

Orthologs for LOC100130476 Gene

Evolution for LOC100130476 Gene

ENSEMBL:
Gene Tree for LOC100130476 (if available)
TreeFam:
Gene Tree for LOC100130476 (if available)

No data available for Orthologs for LOC100130476 Gene

Paralogs for LOC100130476 Gene

No data available for Paralogs for LOC100130476 Gene

Variants for LOC100130476 Gene

Sequence variations from dbSNP and Humsavar for LOC100130476 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000071341 -- 137,855,482(-) C/T intron_variant
rs1000199714 -- 137,833,580(-) A/G intron_variant
rs1000432792 -- 137,861,460(-) G/C intron_variant
rs1000481169 -- 137,849,014(-) C/T intron_variant
rs1000492816 -- 137,867,395(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100130476 Gene

Variant ID Type Subtype PubMed ID
esv2662818 CNV deletion 23128226
esv3341646 CNV insertion 20981092
esv3571419 CNV loss 25503493
esv3610948 CNV gain 21293372
esv3610949 CNV loss 21293372
nsv470863 CNV loss 18288195
nsv474427 CNV novel sequence insertion 20440878
nsv5493 CNV insertion 18451855
nsv830818 CNV gain 17160897
nsv830819 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100130476 Gene

Disorders for LOC100130476 Gene

Additional Disease Information for LOC100130476

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LOC100130476 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130476 Gene

Publications for LOC100130476 Gene

  1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 44 58
  2. Methylation-mediated downregulation of long noncoding RNA LOC100130476 in gastric cardia adenocarcinoma. (PMID: 27189370) Guo W … Wang G (Clinical & experimental metastasis 2016) 3 58
  3. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud PJ … BRIGHT Consortium (American journal of human genetics 2009) 3 58

Products for LOC100130476 Gene

Sources for LOC100130476 Gene

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