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Aliases for LOC100130452 Gene

Subcategory (RNA class) for LOC100130452 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100130452 Gene

  • Uncharacterized LOC100130452 3

External Ids for LOC100130452 Gene

Previous GeneCards Identifiers for LOC100130452 Gene

  • GC02U901414
  • GC02M197273
  • GC02M197565

Summaries for LOC100130452 Gene

GeneCards Summary for LOC100130452 Gene

LOC100130452 (Uncharacterized LOC100130452) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100130452 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130452 Gene

Genomics for LOC100130452 Gene

GeneHancer (GH) Regulatory Elements for LOC100130452 Gene

Promoters and enhancers for LOC100130452 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J196713 Promoter 0.6 EPDnew 650.7 -0.1 -103 0.1 CREB1 LOC100130452 CCDC150 GTF3C3
GH02J196718 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 0.4 -6.4 -6358 1.8 FOXA2 TAF9B ARID4B SIN3A DMAP1 THRB ZNF48 RAD21 ETS1 ATF7 CCDC150 LOC100130452 GTF3C3
GH02J196798 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.2 -86.5 -86461 1.7 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 GTF3C3 SF3B1 NPM1P46 RFTN2 LOC100130452
GH02J196696 Enhancer 0.8 Ensembl ENCODE 0.4 +16.4 16380 1 JUN CEBPB CEBPG EP300 ZNF335 FOSL1 GATA3 JUND SMARCA4 CEBPA CCDC150 ANKRD44 ENSG00000252923 GC02M196687 LOC100130452
GH02J196751 Enhancer 0.9 Ensembl ENCODE 0.3 -38.2 -38247 0.3 CTCF PKNOX1 FOXA2 ZNF644 KMT2B RAD21 YY1 ZNF143 SMC3 ZNF444 HECW2 LOC100130452 GTF3C3 CCDC150
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130452 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130452 gene promoter:
  • STAT3
  • Oct-B1
  • oct-B2
  • oct-B3
  • POU2F1
  • POU2F1a
  • POU2F2
  • POU2F2 (Oct-2.1)
  • POU2F2B
  • POU2F2C

Genomic Locations for LOC100130452 Gene

Genomic Locations for LOC100130452 Gene
chr2:196,700,634-196,713,012
(GRCh38/hg38)
Size:
12,379 bases
Orientation:
Minus strand
chr2:197,565,358-197,577,736
(GRCh37/hg19)
Size:
12,379 bases
Orientation:
Minus strand

Genomic View for LOC100130452 Gene

Genes around LOC100130452 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130452 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130452 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130452 Gene

Proteins for LOC100130452 Gene

Post-translational modifications for LOC100130452 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130452 Gene

Domains & Families for LOC100130452 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130452 Gene

Function for LOC100130452 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130452 Gene

Localization for LOC100130452 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130452 Gene

Pathways & Interactions for LOC100130452 Gene

SuperPathways for LOC100130452 Gene

No Data Available

Interacting Proteins for LOC100130452 Gene

Gene Ontology (GO) - Biological Process for LOC100130452 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130452 Gene

Drugs & Compounds for LOC100130452 Gene

No Compound Related Data Available

Transcripts for LOC100130452 Gene

mRNA/cDNA for LOC100130452 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for LOC100130452 Gene

Uncharacterized LOC100130452:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130452 Gene

No ASD Table

Relevant External Links for LOC100130452 Gene

GeneLoc Exon Structure for
LOC100130452

Expression for LOC100130452 Gene

SOURCE GeneReport for Unigene cluster for LOC100130452 Gene:

Hs.591625
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130452 Gene

Orthologs for LOC100130452 Gene

No data available for Orthologs and Evolution for LOC100130452 Gene

Paralogs for LOC100130452 Gene

No data available for Paralogs for LOC100130452 Gene

Variants for LOC100130452 Gene

Sequence variations from dbSNP and Humsavar for LOC100130452 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000297890 -- 196,706,925(-) G/A intron_variant
rs1000396465 -- 196,706,681(-) A/G intron_variant
rs1000427859 -- 196,711,665(-) C/A intron_variant
rs1000860796 -- 196,711,879(-) A/G intron_variant
rs1001383046 -- 196,706,555(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100130452 Gene

Variant ID Type Subtype PubMed ID
nsv997576 CNV gain 25217958
esv3575323 CNV gain 25503493

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100130452 Gene

Disorders for LOC100130452 Gene

Additional Disease Information for LOC100130452

No disorders were found for LOC100130452 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130452 Gene

Publications for LOC100130452 Gene

No publications were found for LOC100130452 Gene.

Products for LOC100130452 Gene

Sources for LOC100130452 Gene

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