Aliases for LOC100130449 Gene

Data sources for LOC100130449 Gene:

Subcategory (RNA class) for LOC100130449 Gene

lncRNA

Aliases for LOC100130449 Gene

External Ids for LOC100130449 Gene

Summaries for LOC100130449 Gene

GeneCards Summary for LOC100130449 Gene

LOC100130449 (Uncharacterized LOC100130449) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100130449 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100130449 Gene

Genomics for LOC100130449 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100130449 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J240452 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas 259 +0.8 830 7.6 ZNF217 ZIC2 SIN3A ZNF341 GABPB1 CTBP1 RARA TEAD3 SP2 THRB LOC100130449 MIR149 HDLBP GPC1 DUSP28
GH02J240432 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5 +20.6 20600 6.3 CTCF ZIC2 CEBPB SIN3A REST MAX VEZF1 TRIM22 EP300 POLR2A GPC1 ENSG00000223374 ANKMY1 LOC100130449 MIR149 DUSP28
GH02J240449 Promoter/Enhancer 1 Ensembl ENCODE 8.2 +5.9 5924 2.5 ZIC2 ZNF341 EBF1 KLF9 ZNF146 CTCF ZNF189 GLIS1 SP7 KLF1 LOC100130449 MIR149 GPC1 DUSP28
GH02J240521 Promoter 0.4 Ensembl 11.4 -63.3 -63287 0.4 EZH2 LOC100130449 MIR149 GPC1 ANKMY1 piR-50695 lnc-AQP12B-6 DUSP28
GH02J240513 Enhancer 0.8 ENCODE 5.5 -57.5 -57476 1.4 CEBPA CTCF THAP11 REST IRF4 TRIM22 SAP130 ZSCAN9 SMC3 RAD21 CAPN10 LOC100130449 GPR35 lnc-AQP12B-6 piR-50695 DUSP28 ANKMY1 GPC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100130449 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC100130449

Genomic Locations for LOC100130449 Gene

Latest Assembly
chr2:240,449,314-240,456,714
(GRCh38/hg38)
Size:
7,401 bases
Orientation:
Minus strand

Previous Assembly
chr2:241,388,796-241,396,117
(GRCh37/hg19 by Entrez Gene)
Size:
7,322 bases
Orientation:
Minus strand

chr2:241,388,732-241,396,131
(GRCh37/hg19 by Ensembl)
Size:
7,400 bases
Orientation:
Minus strand

Genomic View for LOC100130449 Gene

Genes around LOC100130449 on UCSC Golden Path with GeneCards custom track
LOC100130449 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100130449 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130449 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130449 Gene

Proteins for LOC100130449 Gene

Post-translational modifications for LOC100130449 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130449 Gene

Domains & Families for LOC100130449 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100130449 Gene

Function for LOC100130449 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130449 Gene

Localization for LOC100130449 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130449 Gene

Pathways & Interactions for LOC100130449 Gene

PathCards logo

SuperPathways for LOC100130449 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100130449 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100130449 Gene

Drugs & Compounds for LOC100130449 Gene

No Compound Related Data Available

Transcripts for LOC100130449 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100130449 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B383E_9606 lncRNA 2019 3

Ensembl: ENST00000404891 (view in UCSC) ,

LNCipedia: lnc-ANKMY1-2:4,

NONCODE: NONHSAT186531.1,

URS00009AD5F7_9606 lncRNA 934 3

Ensembl: ENST00000404327 (view in UCSC) ,

LNCipedia: lnc-ANKMY1-2:3,

NONCODE: NONHSAT186530.1,

URS0000E60B3F_9606 lncRNA 959 1

RefSeq: NR_161169,

URS00008C0023_9606 lncRNA 1669 2

LNCipedia: lnc-ANKMY1-2:5,

NONCODE: NONHSAT077820.2,

URS00008B978D_9606 lncRNA 1542 2

LNCipedia: lnc-ANKMY1-2:7,

NONCODE: NONHSAT077819.2,

LOC100130449 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100130449 Gene

3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130449 Gene

No ASD Table

Relevant External Links for LOC100130449 Gene

GeneLoc Exon Structure for
LOC100130449

Expression for LOC100130449 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100130449

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130449 Gene

Orthologs for LOC100130449 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC100130449 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 97 (a)
OneToOne
Species where no ortholog for LOC100130449 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LOC100130449 Gene

ENSEMBL:
Gene Tree for LOC100130449 (if available)
TreeFam:
Gene Tree for LOC100130449 (if available)

Paralogs for LOC100130449 Gene

No data available for Paralogs for LOC100130449 Gene

Variants for LOC100130449 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100130449 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130449 Gene

Disorders for LOC100130449 Gene

Additional Disease Information for LOC100130449

Open Targets Platform
Open Targets Platform

No disorders were found for LOC100130449 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130449 Gene

Publications for LOC100130449 Gene

  1. High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. (PMID: 26760575) Uren PJ … Penalva LO (RNA biology 2016) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 3
  4. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B … Gibbs RA (Analytical biochemistry 1996) 3

No data available for Mastermind for LOC100130449 Gene

Products for LOC100130449 Gene

Sources for LOC100130449 Gene