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Aliases for LOC100130417 Gene

Subcategory (RNA class) for LOC100130417 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100130417 Gene

  • Uncharacterized LOC100130417 3
  • AL645608.1 5

External Ids for LOC100130417 Gene

Previous GeneCards Identifiers for LOC100130417 Gene

  • GC01U901863
  • GC01M000856

Summaries for LOC100130417 Gene

GeneCards Summary for LOC100130417 Gene

LOC100130417 (Uncharacterized LOC100130417) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100130417 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130417 Gene

Genomics for LOC100130417 Gene

GeneHancer (GH) Regulatory Elements for LOC100130417 Gene

Promoters and enhancers for LOC100130417 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J000919 Enhancer 1.4 Ensembl ENCODE dbSUPER 650.7 +0.6 625 2.4 PKNOX1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF213 KLF13 DEK ZHX2 LOC100130417 GC01M000917 ENSG00000229905 WBP1LP6 ENSG00000235146 MIR1302-2HG DDX11L1 ENSG00000230699 HES4 LINC00115
GH01J000923 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 5.3 -3.7 -3740 2 SIN3A ZNF2 YY1 GLIS2 ZNF213 KLF7 SP3 ZNF610 GMEB1 SMARCA4 SAMD11 ENSG00000229905 WBP1LP6 ENSG00000235146 MIR1302-2HG ATAD3B DDX11L1 PUSL1 LINC01128 PERM1
GH01J000937 Enhancer 0.9 ENCODE 7.6 -17.5 -17463 1.2 HDGF KLF17 SIN3A ZNF2 RAD21 ZNF766 GLIS2 EGR1 SCRT2 KLF7 NOC2L KLHL17 ENSG00000241180 PLEKHN1 LOC100130417 ISG15 ENSG00000230021 GC01M000926 SAMD11
GH01J000915 Enhancer 0.9 dbSUPER 6.1 +4.3 4285 2.8 PKNOX1 KLF17 FEZF1 ZNF335 GLIS2 ZNF213 EGR1 RCOR1 EGR2 CEBPB PERM1 ENSG00000230699 LOC100130417 HES4 ISG15 ENSG00000241180 GC01M000917 ENSG00000272438 LOC284600
GH01J000922 Enhancer 0.9 FANTOM5 dbSUPER 0.7 -2.1 -2056 0.4 CTCF ZNF768 SUZ12 ZNF10 ZMYM3 HDAC2 ZNF341 ZFP36 KDM1A ZBTB33 SAMD11 LOC100130417
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130417 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130417 Gene

Genomic Locations for LOC100130417 Gene
chr1:916,818-921,016
(GRCh38/hg38)
Size:
4,199 bases
Orientation:
Minus strand
chr1:852,245-856,396
(GRCh37/hg19)
Size:
4,152 bases
Orientation:
Minus strand

Genomic View for LOC100130417 Gene

Genes around LOC100130417 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130417 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130417 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130417 Gene

Proteins for LOC100130417 Gene

Post-translational modifications for LOC100130417 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130417 Gene

Domains & Families for LOC100130417 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130417 Gene

Function for LOC100130417 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130417 Gene

Localization for LOC100130417 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130417 Gene

Pathways & Interactions for LOC100130417 Gene

SuperPathways for LOC100130417 Gene

No Data Available

Interacting Proteins for LOC100130417 Gene

Gene Ontology (GO) - Biological Process for LOC100130417 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130417 Gene

Drugs & Compounds for LOC100130417 Gene

No Compound Related Data Available

Transcripts for LOC100130417 Gene

mRNA/cDNA for LOC100130417 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Unigene Clusters for LOC100130417 Gene

Uncharacterized LOC100130417:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130417 Gene

No ASD Table

Relevant External Links for LOC100130417 Gene

GeneLoc Exon Structure for
LOC100130417

Expression for LOC100130417 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130417 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100130417 Gene

This gene is overexpressed in Pituitary (x5.4), Prostate (x5.3), and Spleen (x4.4).

SOURCE GeneReport for Unigene cluster for LOC100130417 Gene:

Hs.200644
genes like me logo Genes that share expression patterns with LOC100130417: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130417 Gene

Orthologs for LOC100130417 Gene

Evolution for LOC100130417 Gene

ENSEMBL:
Gene Tree for LOC100130417 (if available)
TreeFam:
Gene Tree for LOC100130417 (if available)

No data available for Orthologs for LOC100130417 Gene

Paralogs for LOC100130417 Gene

No data available for Paralogs for LOC100130417 Gene

Variants for LOC100130417 Gene

Sequence variations from dbSNP and Humsavar for LOC100130417 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000134218 -- 921,208(-) C/T upstream_transcript_variant
rs1000244569 -- 917,698(-) C/T non_coding_transcript_variant
rs1000249072 -- 921,423(-) G/A upstream_transcript_variant
rs1000343769 -- 918,445(-) C/T intron_variant
rs1000579776 -- 918,507(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100130417 Gene

Variant ID Type Subtype PubMed ID
nsv950451 CNV deletion 24416366
nsv832980 CNV gain 17160897
nsv544895 CNV loss 21841781
nsv517709 CNV gain+loss 19592680
nsv509035 CNV insertion 20534489
nsv482937 CNV loss 15286789
nsv428334 CNV gain 18775914
nsv10161 CNV gain+loss 18304495
esv3584982 CNV gain 21293372
esv3584981 CNV loss 21293372
esv2762302 CNV gain 21179565
dgv6n54 CNV loss 21841781
dgv5n100 CNV gain 25217958
dgv3n111 CNV duplication 26073780
dgv2n67 CNV gain 20364138
dgv1n111 CNV duplication 26073780

Variation tolerance for LOC100130417 Gene

Gene Damage Index Score: 0.96; 19.83% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Additional Variant Information for LOC100130417 Gene

Disorders for LOC100130417 Gene

Additional Disease Information for LOC100130417

No disorders were found for LOC100130417 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130417 Gene

Publications for LOC100130417 Gene

  1. Why do cellular proteins linked to K63-polyubiquitin chains not associate with proteasomes? (PMID: 23314748) Nathan JA … Goldberg AL (The EMBO journal 2013) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Identification of a five-lncRNA signature for predicting the risk of tumor recurrence in breast cancer patients. (PMID: 29707762) Li J … Xu C (International journal of cancer 2018) 3

Products for LOC100130417 Gene

Sources for LOC100130417 Gene

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