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Aliases for LOC100130394 Gene

Aliases for LOC100130394 Gene

  • Translation Machinery Associated 7 Homolog (S. Cerevisiae) Pseudogene 3
  • Translational Machinery Associated 7 Homolog Pseudogene 3
  • CCDC72 Pseudogene 3
  • AC027309.2 5

External Ids for LOC100130394 Gene

Previous GeneCards Identifiers for LOC100130394 Gene

  • GC05U900838
  • GC05M172015
  • GC05M172086
  • GC05M172089
  • GC05M172092

Summaries for LOC100130394 Gene

GeneCards Summary for LOC100130394 Gene

LOC100130394 (Translation Machinery Associated 7 Homolog (S. Cerevisiae) Pseudogene) is a Pseudogene.

Additional gene information for LOC100130394 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130394 Gene

Genomics for LOC100130394 Gene

GeneHancer (GH) Regulatory Elements for LOC100130394 Gene

Promoters and enhancers for LOC100130394 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J172656 Promoter/Enhancer 0.7 EPDnew dbSUPER 650.7 0.0 -22 0.1 LOC100130394 GC05P172658 GC05M172660 GC05M172658 GC05M172657 UBTD2 RPL26L1 ENSG00000254295 LOC100268168 NEURL1B
GH05J172654 Enhancer 0.3 dbSUPER 650.7 +1.4 1363 0.9 SETDB1 LOC100130394 GC05M172660 GC05M172657 RPL26L1 ENSG00000254295 LOC100268168 NEURL1B
GH05J172787 Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -139.0 -139008 16.6 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B YBX1 ZBTB7B IRF4 YY1 CREBRF ERGIC1 BOD1 SH3PXD2B DUSP1 FBXW11 LOC401218 LOC105377730 CDC42P5 LOC100130394
GH05J172894 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -244.2 -244214 12.7 CLOCK MLX FEZF1 IRF4 YY1 E2F8 ZNF416 MEF2D SSRP1 GLIS1 KLF3P1 BOD1 BNIP1 UBTD2 ERGIC1 DUSP1 ENSG00000253628 ENSG00000253172 FBXW11 EFCAB9
GH05J173093 Enhancer 1.1 Ensembl ENCODE 10.2 -437.4 -437448 1.4 FOXA2 NFIB FEZF1 ZEB1 ZNF213 ZNF366 SCRT2 ZNF350 RCOR1 KLF13 CREBRF ENSG00000207210 BOD1 LOC100130394 CDC42P5 GC05P173099
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130394 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130394 Gene

Genomic Locations for LOC100130394 Gene
chr5:172,656,359-172,656,734
(GRCh38/hg38)
Size:
376 bases
Orientation:
Minus strand
chr5:172,083,362-172,083,737
(GRCh37/hg19)
Size:
376 bases
Orientation:
Minus strand

Genomic View for LOC100130394 Gene

Genes around LOC100130394 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130394 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130394 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130394 Gene

Proteins for LOC100130394 Gene

Post-translational modifications for LOC100130394 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130394 Gene

Domains & Families for LOC100130394 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130394 Gene

Function for LOC100130394 Gene

Phenotypes From GWAS Catalog for LOC100130394 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130394 Gene

Localization for LOC100130394 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130394 Gene

Pathways & Interactions for LOC100130394 Gene

SuperPathways for LOC100130394 Gene

No Data Available

Interacting Proteins for LOC100130394 Gene

Gene Ontology (GO) - Biological Process for LOC100130394 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130394 Gene

Drugs & Compounds for LOC100130394 Gene

No Compound Related Data Available

Transcripts for LOC100130394 Gene

mRNA/cDNA for LOC100130394 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130394 Gene

No ASD Table

Relevant External Links for LOC100130394 Gene

GeneLoc Exon Structure for
LOC100130394

Expression for LOC100130394 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130394 Gene

genes like me logo Genes that share expression patterns with LOC100130394: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130394 Gene

Orthologs for LOC100130394 Gene

Evolution for LOC100130394 Gene

ENSEMBL:
Gene Tree for LOC100130394 (if available)
TreeFam:
Gene Tree for LOC100130394 (if available)

No data available for Orthologs for LOC100130394 Gene

Paralogs for LOC100130394 Gene

No data available for Paralogs for LOC100130394 Gene

Variants for LOC100130394 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130394 Gene

Disorders for LOC100130394 Gene

Additional Disease Information for LOC100130394

No disorders were found for LOC100130394 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130394 Gene

Publications for LOC100130394 Gene

No publications were found for LOC100130394 Gene.

Products for LOC100130394 Gene

Sources for LOC100130394 Gene

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